SRR23225808 · Gut microbiome

MFRC06

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Clostridium sardiniense	Clostridium	42.4373
Clostridium baratii	Clostridium	25.3689
Butyricicoccus pullicaecorum	Butyricicoccus	3.8562
Faecalibacterium prausnitzii	Faecalibacterium	3.6528
Clostridium budayi	Clostridium	2.6717
Intestinibacter bartlettii	Intestinibacter	2.6143
Clostridium saudiense	Clostridium	2.1867
Clostridium paraputrificum	Clostridium	2.0288
Butyricicoccus faecihominis	Butyricicoccus	1.7618
Roseburia hominis	Roseburia	1.6291
Clostridium carnis	Clostridium	1.5644
Clostridium septicum	Clostridium	0.9803
Clostridium beijerinckii	Clostridium	0.9387
Blautia glucerasea	Blautia	0.7958
Comamonas testosteroni	Comamonas	0.6472
Roseburia intestinalis	Roseburia	0.5464
Rummeliibacillus stabekisii	Rummeliibacillus	0.5439
Clostridium isatidis	Clostridium	0.5187
Clostridium fallax	Clostridium	0.5137
Lysinibacillus sphaericus	Lysinibacillus	0.4911
Clostridium botulinum	Clostridium	0.4790
Clostridium cellulovorans	Clostridium	0.4540
Clostridium moniliforme	Clostridium	0.4333
Anaerobutyricum hallii	Anaerobutyricum	0.3956
Clostridium nitritogenes	Clostridium	0.3491
Clostridium tertium	Clostridium	0.3244
Clostridium felsineum	Clostridium	0.3141
Comamonas kerstersii	Comamonas	0.2613
Blautia producta	Blautia	0.2549
Clostridium butyricum	Clostridium	0.2483
Anaerostipes hadrus	Anaerostipes	0.2101
Clostridium chauvoei	Clostridium	0.1973
Lysinibacillus fusiformis	Lysinibacillus	0.1764
Acinetobacter cumulans	Acinetobacter	0.1545

Saved public metadata

{
  "run_accession": "SRR23225808",
  "study_accession": "PRJNA926923",
  "sample_accession": "SAMN32886366",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "MinION",
  "library_strategy": "AMPLICON",
  "library_source": "OTHER",
  "library_selection": "PCR",
  "read_count": "24190",
  "base_count": "34994533",
  "fastq_bytes": "24584148",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/008/SRR23225808/SRR23225808_1.fastq.gz",
  "sample_title": "MFRC06",
  "scientific_name": "gut metagenome"
}

Public files

SRR23225808_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "02ee2e2592326cbb9f060f744342c4138e4dbfcc7a6f7933fce1ede2ecdd8268",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1470.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 3668,
    "elapsed_seconds": 2.5861552370001846,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 1,
      "fraction": 0.005,
      "adapters_found": {
        "BC_FLANK": 1
      },
      "should_trim": false
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}