SRR23225807 · Gut microbiome

MFRC07

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Clostridium sardiniense	Clostridium	42.1831
Clostridium baratii	Clostridium	25.3668
Clostridium tarantellae	Clostridium	11.9069
Clostridium budayi	Clostridium	2.8636
Faecalibacterium prausnitzii	Faecalibacterium	2.3734
Clostridium beijerinckii	Clostridium	1.9694
Clostridium saudiense	Clostridium	1.7434
Clostridium carnis	Clostridium	1.7318
Clostridium phytofermentans	Clostridium	1.1280
Clostridium septicum	Clostridium	0.9927
Clostridium botulinum	Clostridium	0.7542
Anaerobutyricum hallii	Anaerobutyricum	0.6836
Clostridium fallax	Clostridium	0.5653
Blautia glucerasea	Blautia	0.5435
Kurthia gibsonii	Kurthia	0.5359
Sarcina ventriculi	Sarcina	0.4966
Kurthia zopfii	Kurthia	0.4944
Clostridium butyricum	Clostridium	0.4857
Clostridium cellulovorans	Clostridium	0.4798
Clostridium moniliforme	Clostridium	0.4488
Clostridium saccharobutylicum	Clostridium	0.4337
Clostridium nitritogenes	Clostridium	0.3834
Clostridium isatidis	Clostridium	0.3071
Clostridium felsineum	Clostridium	0.2910
Gemmiger formicilis	Gemmiger	0.1968
Clostridium scatologenes	Clostridium	0.1560
Blautia producta	Blautia	0.1472
Clostridium chromiireducens	Clostridium	0.1405
Sarcina maxima	Sarcina	0.1295
Lactobacillus acidophilus	Lactobacillus	0.0679

Saved public metadata

{
  "run_accession": "SRR23225807",
  "study_accession": "PRJNA926923",
  "sample_accession": "SAMN32886367",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "MinION",
  "library_strategy": "AMPLICON",
  "library_source": "OTHER",
  "library_selection": "PCR",
  "read_count": "20581",
  "base_count": "29723672",
  "fastq_bytes": "20239220",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/007/SRR23225807/SRR23225807_1.fastq.gz",
  "sample_title": "MFRC07",
  "scientific_name": "gut metagenome"
}

Public files

SRR23225807_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "fea2e5d5310d2ced9087228ad4e1420ac29d564187e420616aac771dadbb5f43",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1469.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 2297,
    "elapsed_seconds": 2.6663793420000275,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 0,
      "fraction": 0.0,
      "adapters_found": {},
      "should_trim": false
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}