SRR23225805 · Gut microbiome
MFRC09
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Klebsiella pneumoniae | Klebsiella | 17.7936 |
| Acinetobacter cumulans | Acinetobacter | 8.5607 |
| Klebsiella variicola | Klebsiella | 8.1226 |
| Citrobacter amalonaticus | Citrobacter | 7.4744 |
| Citrobacter farmeri | Citrobacter | 7.4112 |
| Clostridium sardiniense | Clostridium | 7.4032 |
| Citrobacter portucalensis | Citrobacter | 5.8088 |
| Escherichia coli | Escherichia | 5.7930 |
| Rummeliibacillus stabekisii | Rummeliibacillus | 4.7920 |
| Clostridium baratii | Clostridium | 4.0000 |
| Acinetobacter haemolyticus | Acinetobacter | 3.5639 |
| Klebsiella quasipneumoniae | Klebsiella | 2.6380 |
| Citrobacter freundii | Citrobacter | 1.9842 |
| Clostridium phytofermentans | Clostridium | 1.5249 |
| Acinetobacter baumannii | Acinetobacter | 1.4206 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.0702 |
| Citrobacter koseri | Citrobacter | 1.0152 |
| Klebsiella aerogenes | Klebsiella | 1.0027 |
| Acinetobacter chinensis | Acinetobacter | 0.9269 |
| Comamonas kerstersii | Comamonas | 0.8059 |
| Kurthia zopfii | Kurthia | 0.7732 |
| Comamonas testosteroni | Comamonas | 0.7406 |
| Kurthia gibsonii | Kurthia | 0.6490 |
| Citrobacter youngae | Citrobacter | 0.6087 |
| Citrobacter braakii | Citrobacter | 0.6056 |
| Clostridium budayi | Clostridium | 0.5167 |
| Intestinibacter bartlettii | Intestinibacter | 0.3938 |
| Sphaerochaeta globosa | Sphaerochaeta | 0.3902 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 0.3580 |
| Comamonas terrigena | Comamonas | 0.3434 |
| Clostridium septicum | Clostridium | 0.3152 |
| Acinetobacter johnsonii | Acinetobacter | 0.2902 |
| Clostridium carnis | Clostridium | 0.2864 |
| Bacteroides intestinalis | Bacteroides | 0.2148 |
| Klebsiella michiganensis | Klebsiella | 0.2089 |
| Pseudomonas citronellolis | Pseudomonas | 0.1933 |
Saved public metadata
{
"run_accession": "SRR23225805",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886369",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17320",
"base_count": "25379703",
"fastq_bytes": "18805577",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/005/SRR23225805/SRR23225805_1.fastq.gz",
"sample_title": "MFRC09",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "84f15928a8b083988cc99087ed7c5fb5e9b42e8376be37b55ff136b69deb7235",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1494.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17320,
"reads_skipped": 3202,
"elapsed_seconds": 2.827538693000008,
"reads_submitted": 17320,
"reads_after_filter": 17320,
"adapter_scan": {
"sampled": 200,
"matched": 46,
"fraction": 0.23,
"adapters_found": {
"BC_FLANK": 46
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}