SRR23225804 · Gut microbiome
MFRC10
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Stenotrophomonas maltophilia | Stenotrophomonas | 30.6704 |
| Sphingomonas colocasiae | Sphingomonas | 17.1320 |
| Brevundimonas diminuta | Brevundimonas | 6.9965 |
| Comamonas testosteroni | Comamonas | 5.5790 |
| Clostridium sardiniense | Clostridium | 5.4125 |
| Comamonas kerstersii | Comamonas | 5.1473 |
| Clostridium baratii | Clostridium | 3.3289 |
| Comamonas terrigena | Comamonas | 2.9121 |
| Comamonas phosphati | Comamonas | 2.8769 |
| Brevundimonas naejangsanensis | Brevundimonas | 2.6446 |
| Hydrogenophaga atypica | Hydrogenophaga | 1.3296 |
| Stenotrophomonas ginsengisoli | Stenotrophomonas | 1.3062 |
| Stenotrophomonas nitritireducens | Stenotrophomonas | 1.2325 |
| Sphingomonas melonis | Sphingomonas | 1.1221 |
| Roseateles depolymerans | Roseateles | 1.0103 |
| Intestinibacter bartlettii | Intestinibacter | 0.9664 |
| Clostridium paraputrificum | Clostridium | 0.7954 |
| Clostridium tertium | Clostridium | 0.7616 |
| Solibacillus silvestris | Solibacillus | 0.7605 |
| Clostridium beijerinckii | Clostridium | 0.5878 |
| Roseateles chitosanitabidus | Roseateles | 0.5590 |
| Sphingomonas mohensis | Sphingomonas | 0.5575 |
| Stenotrophomonas acidaminiphila | Stenotrophomonas | 0.5055 |
| Brevundimonas halotolerans | Brevundimonas | 0.4716 |
| Ruminococcus champanellensis | Ruminococcus | 0.4716 |
| Sphingomonas desiccabilis | Sphingomonas | 0.4603 |
| Sphingomonas taxi | Sphingomonas | 0.4584 |
| Clostridium tunisiense | Clostridium | 0.4020 |
| Clostridium budayi | Clostridium | 0.3880 |
| Solibacillus isronensis | Solibacillus | 0.3760 |
| Clostridium septicum | Clostridium | 0.3453 |
| Pseudomonas alkylphenolica | Pseudomonas | 0.3324 |
| Sphingomonas sanxanigenens | Sphingomonas | 0.3161 |
| Clostridium carnis | Clostridium | 0.2938 |
| Prevotella copri | Prevotella | 0.2860 |
| Sphingomonas echinoides | Sphingomonas | 0.2783 |
| Acinetobacter cumulans | Acinetobacter | 0.2551 |
| Brevundimonas vesicularis | Brevundimonas | 0.2468 |
| Comamonas serinivorans | Comamonas | 0.1991 |
| Flavobacterium tangerinum | Flavobacterium | 0.1237 |
| Pseudomonas alcaligenes | Pseudomonas | 0.1005 |
Saved public metadata
{
"run_accession": "SRR23225804",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886370",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "16774",
"base_count": "24256530",
"fastq_bytes": "18302997",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/004/SRR23225804/SRR23225804_1.fastq.gz",
"sample_title": "MFRC10",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "156f32c535f173d309127bfc1f544364d4127f0ed6ed202ffa7c239e247f78e8",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1476.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16774,
"reads_skipped": 3499,
"elapsed_seconds": 1.58454535300001,
"reads_submitted": 16774,
"reads_after_filter": 16774,
"adapter_scan": {
"sampled": 200,
"matched": 22,
"fraction": 0.11,
"adapters_found": {
"BC_FLANK": 21,
"27F": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}