SRR23225803 · Gut microbiome
KPE08
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 14.6004 |
| Prevotella ruminicola | Prevotella | 12.4940 |
| Selenomonas ruminantium | Selenomonas | 6.6616 |
| Muribaculum intestinale | Muribaculum | 5.7475 |
| Prevotella stercorea | Prevotella | 5.6330 |
| Sphaerochaeta globosa | Sphaerochaeta | 5.6076 |
| Anaerovibrio lipolyticus | Anaerovibrio | 4.0625 |
| Anaerostipes hadrus | Anaerostipes | 4.0246 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 3.4086 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.9223 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.8974 |
| Commensalibacter intestini | Commensalibacter | 2.5378 |
| Lactobacillus johnsonii | Lactobacillus | 2.3327 |
| Prevotella oryzae | Prevotella | 2.0723 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.9033 |
| Prevotella oris | Prevotella | 1.8402 |
| Prevotella jejuni | Prevotella | 1.7721 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 1.7688 |
| Methylacidimicrobium cyclopophantes | Methylacidimicrobium | 1.6675 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 1.6423 |
| Prevotella fusca | Prevotella | 1.4755 |
| Prevotella heparinolytica | Prevotella | 1.4409 |
| Selenomonas bovis | Selenomonas | 1.3175 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.3106 |
| Prevotella brevis | Prevotella | 1.2610 |
| Selenomonas sputigena | Selenomonas | 1.2115 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.2016 |
| Prevotella oulorum | Prevotella | 1.0591 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.8972 |
| Prevotella saccharolytica | Prevotella | 0.8088 |
| Prevotella buccalis | Prevotella | 0.6634 |
| Fibrobacter succinogenes | Fibrobacter | 0.6409 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.5866 |
| Prevotella melaninogenica | Prevotella | 0.5289 |
Saved public metadata
{
"run_accession": "SRR23225803",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886308",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "22405",
"base_count": "32550105",
"fastq_bytes": "26639663",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/003/SRR23225803/SRR23225803_1.fastq.gz",
"sample_title": "KPE08",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3b8fd308253fd3b056499ec538004b6191d382282172cd9a4264f0484a31d0f1",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 16021,
"elapsed_seconds": 1.2963491990003604,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}