SRR23225801 · Gut microbiome
MFRC12
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium paraputrificum | Clostridium | 17.6869 |
| Lysinibacillus sphaericus | Lysinibacillus | 11.4739 |
| Klebsiella pneumoniae | Klebsiella | 9.2103 |
| Solibacillus silvestris | Solibacillus | 7.3660 |
| Pragia fontium | Pragia | 7.0027 |
| Lysinibacillus fusiformis | Lysinibacillus | 6.7235 |
| Clostridium sardiniense | Clostridium | 5.3746 |
| Klebsiella variicola | Klebsiella | 3.9551 |
| Enterococcus hirae | Enterococcus | 3.8824 |
| Clostridium baratii | Clostridium | 3.3018 |
| Clostridium beijerinckii | Clostridium | 2.6567 |
| Acinetobacter cumulans | Acinetobacter | 2.2918 |
| Acinetobacter haemolyticus | Acinetobacter | 2.1697 |
| Klebsiella quasipneumoniae | Klebsiella | 2.0794 |
| Blautia glucerasea | Blautia | 1.7688 |
| Escherichia coli | Escherichia | 1.5508 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.2600 |
| Gordonibacter urolithinfaciens | Gordonibacter | 1.1631 |
| Enterococcus faecium | Enterococcus | 1.0848 |
| Kurthia zopfii | Kurthia | 0.9502 |
| Acinetobacter johnsonii | Acinetobacter | 0.8208 |
| Corynebacterium variabile | Corynebacterium | 0.7996 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.7996 |
| Enterococcus faecalis | Enterococcus | 0.7754 |
| Ruminococcus champanellensis | Ruminococcus | 0.7512 |
| Clostridium budayi | Clostridium | 0.6626 |
| Klebsiella aerogenes | Klebsiella | 0.6021 |
| Kurthia gibsonii | Kurthia | 0.5764 |
| Lactobacillus johnsonii | Lactobacillus | 0.4362 |
| Prevotella copri | Prevotella | 0.4119 |
| Weissella paramesenteroides | Weissella | 0.4119 |
Saved public metadata
{
"run_accession": "SRR23225801",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886372",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "5760",
"base_count": "8422272",
"fastq_bytes": "6421709",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/001/SRR23225801/SRR23225801_1.fastq.gz",
"sample_title": "MFRC12",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e03db08a76bb1e7b4e83182dd5317c62e4b5b8b0dfcf3b1af171520a714a4582",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1492.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 5760,
"reads_skipped": 1402,
"elapsed_seconds": 1.1761427100000006,
"reads_submitted": 5760,
"reads_after_filter": 5760,
"adapter_scan": {
"sampled": 200,
"matched": 15,
"fraction": 0.075,
"adapters_found": {
"BC_FLANK": 15
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}