SRR23225800 · Gut microbiome
MFRC13
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Butyricicoccus pullicaecorum | Butyricicoccus | 13.5015 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.8121 |
| Clostridium sardiniense | Clostridium | 12.5098 |
| Clostridium baratii | Clostridium | 7.7639 |
| Blautia glucerasea | Blautia | 7.5545 |
| Blautia producta | Blautia | 6.5317 |
| Anaerobutyricum hallii | Anaerobutyricum | 5.5209 |
| Desulfovibrio piger | Desulfovibrio | 3.7580 |
| Clostridium phytofermentans | Clostridium | 3.6317 |
| Anaerostipes hadrus | Anaerostipes | 3.3888 |
| Butyricicoccus faecihominis | Butyricicoccus | 3.0535 |
| Intestinibacter bartlettii | Intestinibacter | 2.2596 |
| Blautia hansenii | Blautia | 2.2210 |
| Ruminococcus champanellensis | Ruminococcus | 2.2080 |
| Clostridium saudiense | Clostridium | 1.8166 |
| Anaerovibrio lipolyticus | Anaerovibrio | 1.6266 |
| Ruminococcus callidus | Ruminococcus | 1.1081 |
| Subdoligranulum variabile | Subdoligranulum | 0.7740 |
| Clostridium budayi | Clostridium | 0.7480 |
| Agathobaculum desmolans | Agathobaculum | 0.6723 |
| Dorea formicigenerans | Dorea | 0.6341 |
| Peptococcus niger | Peptococcus | 0.6250 |
| Gemmiger formicilis | Gemmiger | 0.6046 |
| Clostridium carnis | Clostridium | 0.5698 |
| Clostridium thermosuccinogenes | Clostridium | 0.4480 |
| Clostridium butyricum | Clostridium | 0.4208 |
| Clostridium botulinum | Clostridium | 0.4037 |
| Clostridium septicum | Clostridium | 0.3975 |
| Clostridium beijerinckii | Clostridium | 0.3468 |
| Clostridium paraputrificum | Clostridium | 0.3365 |
| Ruminococcus bromii | Ruminococcus | 0.3218 |
| Floricoccus penangensis | Floricoccus | 0.3168 |
| Blautia marasmi | Blautia | 0.2451 |
| Floricoccus tropicus | Floricoccus | 0.2200 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.1843 |
| Agathobaculum butyriciproducens | Agathobaculum | 0.1763 |
| Clostridium cellulovorans | Clostridium | 0.1683 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.1202 |
Saved public metadata
{
"run_accession": "SRR23225800",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886373",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "19906",
"base_count": "29032055",
"fastq_bytes": "22699701",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/000/SRR23225800/SRR23225800_1.fastq.gz",
"sample_title": "MFRC13",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b78dc747d13e977e2d36080838e699bd458e63a2958143be2ea754b604e078e0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1479.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 19906,
"reads_skipped": 7300,
"elapsed_seconds": 2.262933815999986,
"reads_submitted": 19906,
"reads_after_filter": 19906,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}