SRR23225797 · Gut microbiome
MFRC16
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Roseburia hominis | Roseburia | 18.0983 |
| Blautia glucerasea | Blautia | 12.6095 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.4176 |
| Roseburia intestinalis | Roseburia | 9.1921 |
| Anaerobutyricum hallii | Anaerobutyricum | 7.3693 |
| Blautia hansenii | Blautia | 6.9554 |
| Blautia producta | Blautia | 6.8731 |
| Prevotella copri | Prevotella | 6.3379 |
| Muribaculum intestinale | Muribaculum | 5.5499 |
| Roseburia inulinivorans | Roseburia | 2.6849 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.4042 |
| Prevotella jejuni | Prevotella | 1.0821 |
| Gordonibacter urolithinfaciens | Gordonibacter | 1.0165 |
| Ruminococcus champanellensis | Ruminococcus | 0.9361 |
| Prevotella ruminicola | Prevotella | 0.8848 |
| Prevotella denticola | Prevotella | 0.7869 |
| Prevotella stercorea | Prevotella | 0.7256 |
| Prevotella oris | Prevotella | 0.6109 |
| Desulfovibrio piger | Desulfovibrio | 0.6018 |
| Subdoligranulum variabile | Subdoligranulum | 0.5836 |
| Prevotella fusca | Prevotella | 0.5811 |
| Prevotella heparinolytica | Prevotella | 0.4919 |
| Gemmiger formicilis | Gemmiger | 0.4668 |
| Prevotella colorans | Prevotella | 0.4184 |
| Ruminococcus callidus | Ruminococcus | 0.4014 |
| Prevotella oryzae | Prevotella | 0.3852 |
| Blautia marasmi | Blautia | 0.2806 |
| Ihubacter massiliensis | Ihubacter | 0.2541 |
Saved public metadata
{
"run_accession": "SRR23225797",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886376",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "22431",
"base_count": "32774218",
"fastq_bytes": "25829023",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/097/SRR23225797/SRR23225797_1.fastq.gz",
"sample_title": "MFRC16",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "604ea9cbaace40133d67ce0bb2be062d3964a3e76493cebff87f45dc69ba14f7",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1485.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12456,
"elapsed_seconds": 1.2340090030000397,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}