SRR23225796 · Gut microbiome
MFRC17
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium sardiniense | Clostridium | 20.2100 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 13.6083 |
| Clostridium baratii | Clostridium | 12.2369 |
| Intestinibacter bartlettii | Intestinibacter | 7.3173 |
| Butyricicoccus faecihominis | Butyricicoccus | 5.7275 |
| Ruminococcus champanellensis | Ruminococcus | 4.6654 |
| Blautia glucerasea | Blautia | 4.6250 |
| Clostridium tarantellae | Clostridium | 4.4794 |
| Blautia producta | Blautia | 3.4823 |
| Roseburia hominis | Roseburia | 3.3996 |
| Lachnospira eligens | Lachnospira | 2.5743 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.0352 |
| Blautia hansenii | Blautia | 1.5171 |
| Clostridium saudiense | Clostridium | 1.4451 |
| Anaerostipes hadrus | Anaerostipes | 1.4226 |
| Roseburia intestinalis | Roseburia | 1.3507 |
| Clostridium beijerinckii | Clostridium | 1.2324 |
| Clostridium budayi | Clostridium | 1.2157 |
| Clostridium carnis | Clostridium | 0.9657 |
| Clostridium phytofermentans | Clostridium | 0.9331 |
| Roseburia inulinivorans | Roseburia | 0.7972 |
| Clostridium septicum | Clostridium | 0.7059 |
| Clostridium botulinum | Clostridium | 0.6277 |
| Clostridium thermosuccinogenes | Clostridium | 0.5585 |
| Clostridium fallax | Clostridium | 0.4479 |
| Clostridium paraputrificum | Clostridium | 0.4116 |
| Clostridium cellulovorans | Clostridium | 0.3305 |
| Clostridium moniliforme | Clostridium | 0.3011 |
| Dorea formicigenerans | Dorea | 0.2934 |
| Clostridium felsineum | Clostridium | 0.2847 |
| Sarcina ventriculi | Sarcina | 0.2461 |
| Prevotella copri | Prevotella | 0.2083 |
| Clostridium nitritogenes | Clostridium | 0.2013 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.1420 |
Saved public metadata
{
"run_accession": "SRR23225796",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886377",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15011",
"base_count": "21779793",
"fastq_bytes": "16413175",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/096/SRR23225796/SRR23225796_1.fastq.gz",
"sample_title": "MFRC17",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9e872b4c3f6bb4b88329966ce23780ee940bd97d216a5e46db43f7ca0c4b7f4c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1472,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15011,
"reads_skipped": 4372,
"elapsed_seconds": 1.9346912450000104,
"reads_submitted": 15011,
"reads_after_filter": 15011,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}