SRR23225795 · Gut microbiome
MFRC18
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 24.9705 |
| Clostridium sardiniense | Clostridium | 19.1653 |
| Clostridium baratii | Clostridium | 11.6377 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 8.5193 |
| Blautia glucerasea | Blautia | 8.0917 |
| Butyricicoccus faecihominis | Butyricicoccus | 2.8907 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.7309 |
| Dysosmobacter welbionis | Dysosmobacter | 2.6373 |
| Blautia producta | Blautia | 2.2179 |
| Anaerostipes hadrus | Anaerostipes | 2.0687 |
| Prevotella copri | Prevotella | 1.8075 |
| Collinsella aerofaciens | Collinsella | 1.3988 |
| Roseburia hominis | Roseburia | 1.3985 |
| Intestinibacter bartlettii | Intestinibacter | 1.3261 |
| Clostridium budayi | Clostridium | 1.1432 |
| Blautia hansenii | Blautia | 0.8201 |
| Clostridium carnis | Clostridium | 0.6488 |
| Roseburia intestinalis | Roseburia | 0.6166 |
| Thermus oshimai | Thermus | 0.5228 |
| Parolsenella catena | Parolsenella | 0.5150 |
| Clostridium septicum | Clostridium | 0.5038 |
| Clostridium botulinum | Clostridium | 0.4937 |
| Clostridium paraputrificum | Clostridium | 0.4717 |
| Collinsella bouchesdurhonensis | Collinsella | 0.4574 |
| Desulfovibrio piger | Desulfovibrio | 0.3635 |
| Clostridium thermosuccinogenes | Clostridium | 0.3536 |
| Parolsenella massiliensis | Parolsenella | 0.3396 |
| Thermus thermophilus | Thermus | 0.3319 |
| Collinsella stercoris | Collinsella | 0.3146 |
| Roseburia inulinivorans | Roseburia | 0.2750 |
| Senegalimassilia anaerobia | Senegalimassilia | 0.2652 |
| Agathobaculum desmolans | Agathobaculum | 0.2650 |
| Clostridium fallax | Clostridium | 0.2255 |
| Clostridium moniliforme | Clostridium | 0.2119 |
Saved public metadata
{
"run_accession": "SRR23225795",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886378",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "19710",
"base_count": "28697167",
"fastq_bytes": "22393556",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/095/SRR23225795/SRR23225795_1.fastq.gz",
"sample_title": "MFRC18",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "6cf527eb8e725010fbe1ffe6f37cfc6406f706bc561421205f9156e5065497db",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1475.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 19710,
"reads_skipped": 9365,
"elapsed_seconds": 1.7391758809999374,
"reads_submitted": 19710,
"reads_after_filter": 19710,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}