SRR23225794 · Gut microbiome
MFRC19
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 19.0776 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 16.8102 |
| Blautia glucerasea | Blautia | 14.0417 |
| Intestinibacter bartlettii | Intestinibacter | 5.8694 |
| Butyricicoccus faecihominis | Butyricicoccus | 5.8585 |
| Blautia producta | Blautia | 5.4360 |
| Anaerobutyricum hallii | Anaerobutyricum | 5.3964 |
| Roseburia hominis | Roseburia | 4.3128 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 4.2640 |
| Clostridium sardiniense | Clostridium | 3.2509 |
| Clostridium butyricum | Clostridium | 3.0797 |
| Blautia hansenii | Blautia | 2.5971 |
| Clostridium baratii | Clostridium | 1.9532 |
| Roseburia intestinalis | Roseburia | 1.3815 |
| Ruminococcus champanellensis | Ruminococcus | 1.0343 |
| Prevotella copri | Prevotella | 0.9105 |
| Clostridium beijerinckii | Clostridium | 0.7290 |
| Clostridium phytofermentans | Clostridium | 0.6771 |
| Clostridium thermosuccinogenes | Clostridium | 0.5942 |
| Roseburia inulinivorans | Roseburia | 0.5835 |
| Clostridium botulinum | Clostridium | 0.4455 |
| Gemmiger formicilis | Gemmiger | 0.3577 |
| Subdoligranulum variabile | Subdoligranulum | 0.3561 |
| Clostridium carnis | Clostridium | 0.2652 |
| Prevotella stercorea | Prevotella | 0.2563 |
| Clostridium paraputrificum | Clostridium | 0.2563 |
| Clostridium cellulovorans | Clostridium | 0.2056 |
Saved public metadata
{
"run_accession": "SRR23225794",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886379",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "18842",
"base_count": "27381752",
"fastq_bytes": "21145025",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/094/SRR23225794/SRR23225794_1.fastq.gz",
"sample_title": "MFRC19",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "6b04e1e514fb2c8e3722d67dad46d2f3a0eb40af87060d0c73cf148a4efc96f4",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1476.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 18842,
"reads_skipped": 7428,
"elapsed_seconds": 1.6796923329998208,
"reads_submitted": 18842,
"reads_after_filter": 18842,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}