SRR23225793 · Gut microbiome
MFRC20
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium sardiniense | Clostridium | 29.2819 |
| Clostridium baratii | Clostridium | 18.0528 |
| Clostridium saudiense | Clostridium | 7.8960 |
| Intestinibacter bartlettii | Intestinibacter | 5.9798 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.4961 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 3.8029 |
| Ruminococcus champanellensis | Ruminococcus | 3.6829 |
| Blautia glucerasea | Blautia | 3.5974 |
| Blautia producta | Blautia | 3.5076 |
| Clostridium budayi | Clostridium | 1.8575 |
| Subdoligranulum variabile | Subdoligranulum | 1.6713 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.5249 |
| Roseburia hominis | Roseburia | 1.4137 |
| Clostridium carnis | Clostridium | 1.2171 |
| Blautia hansenii | Blautia | 1.1380 |
| Ruminococcus callidus | Ruminococcus | 1.0967 |
| Clostridium phytofermentans | Clostridium | 0.9566 |
| Clostridium septicum | Clostridium | 0.9085 |
| Clostridium butyricum | Clostridium | 0.8884 |
| Gemmiger formicilis | Gemmiger | 0.8315 |
| Clostridium beijerinckii | Clostridium | 0.7472 |
| Clostridium paraputrificum | Clostridium | 0.7177 |
| Roseburia intestinalis | Roseburia | 0.5771 |
| Clostridium botulinum | Clostridium | 0.5173 |
| Clostridium isatidis | Clostridium | 0.4643 |
| Clostridium moniliforme | Clostridium | 0.3861 |
| Clostridium fallax | Clostridium | 0.3775 |
| Prevotella copri | Prevotella | 0.3222 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 0.3019 |
| Clostridium cellulovorans | Clostridium | 0.2999 |
| Peptococcus niger | Peptococcus | 0.2997 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.2997 |
| Clostridium felsineum | Clostridium | 0.2835 |
| Clostridium nitritogenes | Clostridium | 0.2487 |
| Ruminococcus bromii | Ruminococcus | 0.1886 |
| Blautia marasmi | Blautia | 0.1672 |
Saved public metadata
{
"run_accession": "SRR23225793",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886380",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "28255",
"base_count": "40967164",
"fastq_bytes": "30635938",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/093/SRR23225793/SRR23225793_1.fastq.gz",
"sample_title": "MFRC20",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c1e8387b91dca1324f4e11632793312e75dc737998327f04da567d80b6524c2d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1472.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6568,
"elapsed_seconds": 2.4501947509999997,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}