SRR23225792 · Gut microbiome
KPE09
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 30.1765 |
| Prevotella copri | Prevotella | 8.8263 |
| Muribaculum intestinale | Muribaculum | 6.3779 |
| Dysosmobacter welbionis | Dysosmobacter | 5.3108 |
| Prevotella stercorea | Prevotella | 4.5310 |
| Prevotella saccharolytica | Prevotella | 4.1098 |
| Prevotella ruminicola | Prevotella | 3.9373 |
| Victivallis vadensis | Victivallis | 2.4712 |
| Butyricicoccus faecihominis | Butyricicoccus | 2.4414 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.2343 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.1940 |
| Parabacteroides distasonis | Parabacteroides | 2.1906 |
| Prevotella oris | Prevotella | 1.7284 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 1.6884 |
| Cellulosilyticum lentocellum | Cellulosilyticum | 1.5503 |
| Parabacteroides merdae | Parabacteroides | 1.4542 |
| Allocoprococcus comes | Allocoprococcus | 1.3507 |
| Anaerostipes hadrus | Anaerostipes | 1.3048 |
| Prevotella buccalis | Prevotella | 1.2383 |
| Prevotella fusca | Prevotella | 1.2183 |
| Selenomonas ruminantium | Selenomonas | 1.2126 |
| Eubacterium limosum | Eubacterium | 1.1205 |
| Prevotella shahii | Prevotella | 1.0133 |
| Prevotella heparinolytica | Prevotella | 1.0010 |
| Parabacteroides chongii | Parabacteroides | 0.9255 |
| Prevotella jejuni | Prevotella | 0.8371 |
| Prevotella brevis | Prevotella | 0.8201 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.7895 |
| Anaplasma phagocytophilum | Anaplasma | 0.7323 |
| Prevotella oulorum | Prevotella | 0.6767 |
| Anaerotignum faecicola | Anaerotignum | 0.6599 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.6447 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.6447 |
| Prevotella denticola | Prevotella | 0.5851 |
| Anaplasma marginale | Anaplasma | 0.5724 |
| Prevotella melaninogenica | Prevotella | 0.4631 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.4144 |
| Fibrobacter succinogenes | Fibrobacter | 0.2916 |
| Campylobacter avium | Campylobacter | 0.2609 |
Saved public metadata
{
"run_accession": "SRR23225792",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886309",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "20851",
"base_count": "30082290",
"fastq_bytes": "24427457",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/092/SRR23225792/SRR23225792_1.fastq.gz",
"sample_title": "KPE09",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b8aa1c199acd963aaa2cdd23cb2c8f5b4d2338a15e16e99bcc9c53119a1c4259",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1480.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13378,
"elapsed_seconds": 1.7460061290000013,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}