SRR23225791 · Gut microbiome
MFRC21
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium sardiniense | Clostridium | 15.3293 |
| Ruminococcus champanellensis | Ruminococcus | 9.9393 |
| Intestinibacter bartlettii | Intestinibacter | 9.0215 |
| Clostridium baratii | Clostridium | 8.2012 |
| Roseburia intestinalis | Roseburia | 7.5261 |
| Roseburia hominis | Roseburia | 7.1493 |
| Faecalibacterium prausnitzii | Faecalibacterium | 4.7989 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 4.2362 |
| Hominimerdicola alba | Hominimerdicola | 3.7528 |
| Hominimerdicola aceti | Hominimerdicola | 3.4047 |
| Anaerostipes hadrus | Anaerostipes | 2.5163 |
| Blautia producta | Blautia | 2.4670 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 2.3026 |
| Blautia glucerasea | Blautia | 2.1990 |
| Clostridium phytofermentans | Clostridium | 2.1339 |
| Clostridium merdae | Clostridium | 1.9246 |
| Clostridium butyricum | Clostridium | 1.7597 |
| Clostridium beijerinckii | Clostridium | 1.5754 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.4956 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.3508 |
| Anaerostipes butyraticus | Anaerostipes | 1.1854 |
| Clostridium budayi | Clostridium | 1.1449 |
| Blautia hansenii | Blautia | 1.0760 |
| Clostridium paraputrificum | Clostridium | 1.0022 |
| Clostridium carnis | Clostridium | 0.7076 |
| Clostridium botulinum | Clostridium | 0.5314 |
| Prevotella copri | Prevotella | 0.5188 |
| Gordonibacter urolithinfaciens | Gordonibacter | 0.4035 |
| Coprococcus eutactus | Coprococcus | 0.3459 |
Saved public metadata
{
"run_accession": "SRR23225791",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886381",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "11585",
"base_count": "16847153",
"fastq_bytes": "12979291",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/091/SRR23225791/SRR23225791_1.fastq.gz",
"sample_title": "MFRC21",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "17d8d64c85a26514fe0d0e85265cfa3a7f279c2a6fab4a5d64ebc54aa4e5b953",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1472,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 11585,
"reads_skipped": 4544,
"elapsed_seconds": 1.2670731650000562,
"reads_submitted": 11585,
"reads_after_filter": 11585,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}