SRR23225787 · Gut microbiome
MFRC25
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 27.0894 |
| Clostridium sardiniense | Clostridium | 20.9907 |
| Clostridium baratii | Clostridium | 12.7543 |
| Blautia glucerasea | Blautia | 8.8672 |
| Blautia producta | Blautia | 5.4926 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.7114 |
| Blautia hansenii | Blautia | 2.9801 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 1.8499 |
| Ruminococcus champanellensis | Ruminococcus | 1.6160 |
| Gordonibacter urolithinfaciens | Gordonibacter | 1.4604 |
| Prevotella copri | Prevotella | 1.2961 |
| Clostridium phytofermentans | Clostridium | 1.2849 |
| Clostridium budayi | Clostridium | 1.2835 |
| Gemmiger formicilis | Gemmiger | 0.9732 |
| Subdoligranulum variabile | Subdoligranulum | 0.7164 |
| Clostridium carnis | Clostridium | 0.7111 |
| Marseilla massiliensis | Marseilla | 0.5911 |
| Hominimerdicola aceti | Hominimerdicola | 0.5199 |
| Clostridium saudiense | Clostridium | 0.4970 |
| Peptococcus niger | Peptococcus | 0.4664 |
| Clostridium septicum | Clostridium | 0.4345 |
| Clostridium pacaense | Clostridium | 0.4139 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.3898 |
| Clostridium botulinum | Clostridium | 0.3755 |
| Intestinibacter bartlettii | Intestinibacter | 0.3288 |
| Prevotella stercorea | Prevotella | 0.3071 |
| Hominimerdicola alba | Hominimerdicola | 0.3037 |
| Clostridium beijerinckii | Clostridium | 0.3017 |
| Clostridium moniliforme | Clostridium | 0.2728 |
| Blautia marasmi | Blautia | 0.2716 |
| Clostridium fallax | Clostridium | 0.2676 |
| Anaerotignum faecicola | Anaerotignum | 0.2370 |
| Clostridium paraputrificum | Clostridium | 0.2173 |
| Clostridium cellulovorans | Clostridium | 0.2141 |
| Prevotella ruminicola | Prevotella | 0.1988 |
| Clostridium nitritogenes | Clostridium | 0.1920 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.1223 |
Saved public metadata
{
"run_accession": "SRR23225787",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886385",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "19293",
"base_count": "28057211",
"fastq_bytes": "21508076",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/087/SRR23225787/SRR23225787_1.fastq.gz",
"sample_title": "MFRC25",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "fb26f16072f6752c0739c6764f5daa2c0dae31c69db3cd7df93942dac7d4ab37",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1475,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 19293,
"reads_skipped": 6075,
"elapsed_seconds": 1.8983265040001243,
"reads_submitted": 19293,
"reads_after_filter": 19293,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}