SRR23225786 · Gut microbiome
MFRC26
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 14.4384 |
| Faecalibacterium prausnitzii | Faecalibacterium | 14.3789 |
| Clostridium sardiniense | Clostridium | 9.7767 |
| Anaerobutyricum hallii | Anaerobutyricum | 8.8721 |
| Blautia producta | Blautia | 7.7351 |
| Clostridium baratii | Clostridium | 5.9524 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 5.7499 |
| Ruminococcus champanellensis | Ruminococcus | 3.3938 |
| Blautia hansenii | Blautia | 3.2947 |
| Roseburia hominis | Roseburia | 3.0950 |
| Anaerovibrio lipolyticus | Anaerovibrio | 2.1812 |
| Treponema succinifaciens | Treponema | 1.8548 |
| Clostridium saudiense | Clostridium | 1.8101 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.5557 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 1.4209 |
| Intestinibacter bartlettii | Intestinibacter | 1.4148 |
| Roseburia intestinalis | Roseburia | 1.1787 |
| Clostridium butyricum | Clostridium | 1.0671 |
| Clostridium beijerinckii | Clostridium | 1.0441 |
| Prevotella copri | Prevotella | 0.9236 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.8035 |
| Clostridium phytofermentans | Clostridium | 0.7476 |
| Lachnospira eligens | Lachnospira | 0.6752 |
| Desulfovibrio piger | Desulfovibrio | 0.6424 |
| Floricoccus penangensis | Floricoccus | 0.5960 |
| Clostridium budayi | Clostridium | 0.5871 |
| Gordonibacter urolithinfaciens | Gordonibacter | 0.5306 |
| Floricoccus tropicus | Floricoccus | 0.5294 |
| Sphaerochaeta globosa | Sphaerochaeta | 0.4803 |
| Agathobaculum desmolans | Agathobaculum | 0.4716 |
| Clostridium carnis | Clostridium | 0.4027 |
| Blautia marasmi | Blautia | 0.3542 |
| Ruminococcus callidus | Ruminococcus | 0.3344 |
| Clostridium septicum | Clostridium | 0.3121 |
| Clostridium paraputrificum | Clostridium | 0.2751 |
| Gemmiger formicilis | Gemmiger | 0.2703 |
| Clostridium botulinum | Clostridium | 0.2590 |
| Clostridium thermosuccinogenes | Clostridium | 0.2505 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.2419 |
| Ihubacter massiliensis | Ihubacter | 0.0983 |
Saved public metadata
{
"run_accession": "SRR23225786",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886386",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "19398",
"base_count": "28294303",
"fastq_bytes": "22278045",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/086/SRR23225786/SRR23225786_1.fastq.gz",
"sample_title": "MFRC26",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "06f2bcf39c5eef78004e7ac9b88929b2fb6dc5d2840520cf3b974aa33c9cc02e",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1481.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 19398,
"reads_skipped": 9066,
"elapsed_seconds": 1.7252987280003254,
"reads_submitted": 19398,
"reads_after_filter": 19398,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}