SRR23225783 · Gut microbiome
MFRC29
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Butyricicoccus pullicaecorum | Butyricicoccus | 20.2150 |
| Clostridium sardiniense | Clostridium | 19.5936 |
| Clostridium baratii | Clostridium | 11.2110 |
| Butyricicoccus faecihominis | Butyricicoccus | 8.1945 |
| Ruminococcus champanellensis | Ruminococcus | 5.2679 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 5.1327 |
| Clostridium butyricum | Clostridium | 3.6616 |
| Blautia producta | Blautia | 3.6549 |
| Blautia glucerasea | Blautia | 3.2204 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.1766 |
| Blautia hansenii | Blautia | 2.9377 |
| Clostridium paraputrificum | Clostridium | 1.9415 |
| Intestinibacter bartlettii | Intestinibacter | 1.7975 |
| Roseburia hominis | Roseburia | 1.5600 |
| Clostridium budayi | Clostridium | 1.1851 |
| Clostridium beijerinckii | Clostridium | 1.1629 |
| Roseburia intestinalis | Roseburia | 1.0925 |
| Clostridium carnis | Clostridium | 0.8628 |
| Clostridium thermosuccinogenes | Clostridium | 0.8467 |
| Clostridium botulinum | Clostridium | 0.5906 |
| Clostridium septicum | Clostridium | 0.5132 |
| Clostridium cellulovorans | Clostridium | 0.3565 |
| Clostridium fallax | Clostridium | 0.2972 |
| Floricoccus penangensis | Floricoccus | 0.2615 |
| Clostridium moniliforme | Clostridium | 0.2570 |
| Roseburia inulinivorans | Roseburia | 0.2369 |
| Clostridium merdae | Clostridium | 0.2157 |
| Blautia marasmi | Blautia | 0.2061 |
| Clostridium felsineum | Clostridium | 0.1843 |
| Floricoccus tropicus | Floricoccus | 0.1662 |
Saved public metadata
{
"run_accession": "SRR23225783",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886389",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "20163",
"base_count": "29335057",
"fastq_bytes": "21799434",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/083/SRR23225783/SRR23225783_1.fastq.gz",
"sample_title": "MFRC29",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "30c83759df0091e1274ade712caa97fcade1a7681c697d79f5346a43a591e04a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1475.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4759,
"elapsed_seconds": 2.273482766000143,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}