SRR23225782 · Gut microbiome
MFRC30
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Clostridium sardiniense | Clostridium | 16.4923 |
| Faecalibacterium prausnitzii | Faecalibacterium | 13.0300 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 11.7020 |
| Clostridium baratii | Clostridium | 9.4791 |
| Blautia glucerasea | Blautia | 8.4208 |
| Sphaerochaeta coccoides | Sphaerochaeta | 6.6922 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.9952 |
| Butyricicoccus faecihominis | Butyricicoccus | 3.7592 |
| Blautia producta | Blautia | 3.3863 |
| Prevotella copri | Prevotella | 2.4322 |
| Sphaerochaeta globosa | Sphaerochaeta | 2.0382 |
| Ruminococcus champanellensis | Ruminococcus | 2.0233 |
| Roseburia hominis | Roseburia | 1.8949 |
| Blautia hansenii | Blautia | 1.7003 |
| Lachnospira eligens | Lachnospira | 1.3149 |
| Clostridium budayi | Clostridium | 1.1432 |
| Roseburia intestinalis | Roseburia | 1.0568 |
| Prevotella fusca | Prevotella | 0.9999 |
| Intestinibacter bartlettii | Intestinibacter | 0.8906 |
| Roseburia inulinivorans | Roseburia | 0.6770 |
| Bacteroides uniformis | Bacteroides | 0.6260 |
| Prevotella dentasini | Prevotella | 0.5911 |
| Clostridium carnis | Clostridium | 0.5437 |
| Prevotella stercorea | Prevotella | 0.5377 |
| Clostridium beijerinckii | Clostridium | 0.5035 |
| Marseilla massiliensis | Marseilla | 0.4690 |
| Prevotella ruminicola | Prevotella | 0.4429 |
| Clostridium thermosuccinogenes | Clostridium | 0.4053 |
| Clostridium botulinum | Clostridium | 0.3952 |
| Clostridium septicum | Clostridium | 0.3876 |
| Sphaerochaeta pleomorpha | Sphaerochaeta | 0.3790 |
| Clostridium paraputrificum | Clostridium | 0.3390 |
| Clostridium fallax | Clostridium | 0.2517 |
Saved public metadata
{
"run_accession": "SRR23225782",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886390",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "20877",
"base_count": "30493794",
"fastq_bytes": "24024146",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/082/SRR23225782/SRR23225782_1.fastq.gz",
"sample_title": "MFRC30",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "1fb5f455d1f72317660f77ef9ae75597268f034715e88677eddb810a9e3cc178",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1481.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 9531,
"elapsed_seconds": 1.731085690000043,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}