SRR23225781 · Gut microbiome
KPE10
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 19.9311 |
| Faecalibacterium prausnitzii | Faecalibacterium | 14.2189 |
| Treponema brennaborense | Treponema | 7.1146 |
| Prevotella ruminicola | Prevotella | 5.9127 |
| Muribaculum intestinale | Muribaculum | 4.7278 |
| Prevotella stercorea | Prevotella | 4.4359 |
| Ruminococcus champanellensis | Ruminococcus | 3.8502 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 3.5983 |
| Treponema succinifaciens | Treponema | 3.3453 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.5694 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.5336 |
| Roseburia hominis | Roseburia | 1.7675 |
| Prevotella oulorum | Prevotella | 1.7200 |
| Prevotella oris | Prevotella | 1.6272 |
| Prevotella fusca | Prevotella | 1.5430 |
| Anaerostipes hadrus | Anaerostipes | 1.5331 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.5265 |
| Prevotella jejuni | Prevotella | 1.3771 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 1.3682 |
| Prevotella melaninogenica | Prevotella | 1.3681 |
| Parabacteroides distasonis | Parabacteroides | 1.2990 |
| Prevotella brevis | Prevotella | 1.2241 |
| Prevotella saccharolytica | Prevotella | 1.1097 |
| Parabacteroides merdae | Parabacteroides | 0.9607 |
| Prevotella heparinolytica | Prevotella | 0.8415 |
| Campylobacter avium | Campylobacter | 0.8326 |
| Prevotella buccalis | Prevotella | 0.8042 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.7463 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.6871 |
| Selenomonas ruminantium | Selenomonas | 0.6079 |
| Roseburia intestinalis | Roseburia | 0.5980 |
| Prevotella scopos | Prevotella | 0.5774 |
| Prevotella dentalis | Prevotella | 0.5603 |
| Prevotella oryzae | Prevotella | 0.5212 |
| Prevotella shahii | Prevotella | 0.4886 |
| Prevotella denticola | Prevotella | 0.4834 |
| Treponema pectinovorum | Treponema | 0.4559 |
| Treponema bryantii | Treponema | 0.4493 |
| Ruminococcus bromii | Ruminococcus | 0.4079 |
| Intestinibacter bartlettii | Intestinibacter | 0.2763 |
Saved public metadata
{
"run_accession": "SRR23225781",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886310",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "19711",
"base_count": "28486418",
"fastq_bytes": "23241954",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/081/SRR23225781/SRR23225781_1.fastq.gz",
"sample_title": "KPE10",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "fb42177974095e2fb0598ed29258292ebc706c636c461a3555003d8ba578fa63",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 19711,
"reads_skipped": 12049,
"elapsed_seconds": 1.3602702019998105,
"reads_submitted": 19711,
"reads_after_filter": 19711,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}