SRR23225780 · Gut microbiome
PNY01
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 15.3731 |
| Blautia producta | Blautia | 9.9623 |
| Prevotella copri | Prevotella | 9.0736 |
| Blautia glucerasea | Blautia | 8.0247 |
| Sarcina maxima | Sarcina | 6.6751 |
| Dysosmobacter welbionis | Dysosmobacter | 5.3147 |
| Prevotella ruminicola | Prevotella | 4.0913 |
| Ruminococcus champanellensis | Ruminococcus | 2.7812 |
| Prevotella stercorea | Prevotella | 2.7291 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.5590 |
| Blautia hansenii | Blautia | 2.4997 |
| Muribaculum intestinale | Muribaculum | 2.1030 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.9470 |
| Marseilla massiliensis | Marseilla | 1.9466 |
| Anaerovibrio lipolyticus | Anaerovibrio | 1.9187 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.8725 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.8622 |
| Desulfovibrio piger | Desulfovibrio | 1.8068 |
| Prevotella loescheii | Prevotella | 1.7784 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 1.5097 |
| Gordonibacter urolithinfaciens | Gordonibacter | 1.4544 |
| Prevotella oris | Prevotella | 1.2861 |
| Anaerotignum faecicola | Anaerotignum | 1.2505 |
| Prevotella jejuni | Prevotella | 1.1503 |
| Selenomonas bovis | Selenomonas | 0.9979 |
| Prevotella fusca | Prevotella | 0.8527 |
| Prevotella heparinolytica | Prevotella | 0.8102 |
| Prevotella brevis | Prevotella | 0.7912 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.7847 |
| Prevotella oryzae | Prevotella | 0.7843 |
| Blautia marasmi | Blautia | 0.7009 |
| Prevotella oulorum | Prevotella | 0.5629 |
| Pseudocoprococcus catus | Pseudocoprococcus | 0.4621 |
| Selenomonas ruminantium | Selenomonas | 0.4543 |
| Ruminococcus callidus | Ruminococcus | 0.4510 |
| Blautia luti | Blautia | 0.3990 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.3670 |
| Sarcina ventriculi | Sarcina | 0.3250 |
| Ruminococcus bromii | Ruminococcus | 0.2865 |
Saved public metadata
{
"run_accession": "SRR23225780",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886391",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "30278",
"base_count": "44263677",
"fastq_bytes": "35104766",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/080/SRR23225780/SRR23225780_1.fastq.gz",
"sample_title": "PNY01",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "1ffe385742921945e343acdaca5e8e2330b8bbf35dc269fe0ec8a762574a988b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12552,
"elapsed_seconds": 1.2767894749999869,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}