SRR23225774 · Gut microbiome
PNY07
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Treponema succinifaciens | Treponema | 21.5670 |
| Faecalibacterium prausnitzii | Faecalibacterium | 16.0674 |
| Prevotella copri | Prevotella | 9.7893 |
| Hominimerdicola aceti | Hominimerdicola | 4.1014 |
| Dysosmobacter welbionis | Dysosmobacter | 4.0838 |
| Treponema pallidum | Treponema | 4.0338 |
| Clostridium beijerinckii | Clostridium | 3.8582 |
| Blautia glucerasea | Blautia | 2.7613 |
| Prevotella stercorea | Prevotella | 2.3690 |
| Clostridium butyricum | Clostridium | 2.3182 |
| Bacteroides caecigallinarum | Bacteroides | 2.3101 |
| Bacteroides helcogenes | Bacteroides | 2.0131 |
| Desulfovibrio piger | Desulfovibrio | 1.9850 |
| Prevotella fusca | Prevotella | 1.8225 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.8075 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.6572 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 1.6379 |
| Treponema bryantii | Treponema | 1.4850 |
| Blautia producta | Blautia | 1.3014 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 1.2180 |
| Prevotella loescheii | Prevotella | 1.2156 |
| Prevotella oris | Prevotella | 1.0906 |
| Prevotella jejuni | Prevotella | 1.0114 |
| Prevotella heparinolytica | Prevotella | 0.9800 |
| Chloroflexus aurantiacus | Chloroflexus | 0.9145 |
| Prevotella shahii | Prevotella | 0.8197 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 0.8045 |
| Treponema paraluiscuniculi | Treponema | 0.7596 |
| Clostridium thermosuccinogenes | Clostridium | 0.7211 |
| Prevotella oulorum | Prevotella | 0.6199 |
| Prevotella brevis | Prevotella | 0.5807 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 0.4924 |
| Treponema azotonutricium | Treponema | 0.4873 |
| Clostridium taeniosporum | Clostridium | 0.4450 |
| Clostridium paraputrificum | Clostridium | 0.4366 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 0.4341 |
Saved public metadata
{
"run_accession": "SRR23225774",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886397",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "18273",
"base_count": "26764054",
"fastq_bytes": "21363777",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/074/SRR23225774/SRR23225774_1.fastq.gz",
"sample_title": "PNY07",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "186a1afd457005a95daf2bf62801bb295a137797559742c25cb65cc37b95e5a7",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1486,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 18273,
"reads_skipped": 12439,
"elapsed_seconds": 1.2021864079999887,
"reads_submitted": 18273,
"reads_after_filter": 18273,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}