SRR23225773 · Gut microbiome
PNY08
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 21.9506 |
| Desulfovibrio piger | Desulfovibrio | 12.9870 |
| Blautia glucerasea | Blautia | 10.0983 |
| Clostridium beijerinckii | Clostridium | 7.3917 |
| Dysosmobacter welbionis | Dysosmobacter | 6.5145 |
| Clostridium saccharoperbutylacetonicum | Clostridium | 5.6285 |
| Blautia producta | Blautia | 5.1918 |
| Clostridium butyricum | Clostridium | 5.1529 |
| Prevotella copri | Prevotella | 5.0339 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.5705 |
| Prevotella stercorea | Prevotella | 2.7820 |
| Clostridium paraputrificum | Clostridium | 1.6438 |
| Clostridium phytofermentans | Clostridium | 1.3497 |
| Muribaculum intestinale | Muribaculum | 1.2331 |
| Blautia hansenii | Blautia | 1.1919 |
| Prevotella oris | Prevotella | 0.9747 |
| Clostridium thermosuccinogenes | Clostridium | 0.8202 |
| Prevotella jejuni | Prevotella | 0.7494 |
| Intestinibacter bartlettii | Intestinibacter | 0.6835 |
| Marseilla massiliensis | Marseilla | 0.6735 |
| Agathobaculum desmolans | Agathobaculum | 0.5810 |
| Allocoprococcus comes | Allocoprococcus | 0.5810 |
| Subdoligranulum variabile | Subdoligranulum | 0.5336 |
| Prevotella fusca | Prevotella | 0.5092 |
| Prevotella heparinolytica | Prevotella | 0.4186 |
| Prevotella ruminicola | Prevotella | 0.4075 |
| Clostridium taeniosporum | Clostridium | 0.3474 |
Saved public metadata
{
"run_accession": "SRR23225773",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886398",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17064",
"base_count": "24945665",
"fastq_bytes": "19444586",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/073/SRR23225773/SRR23225773_1.fastq.gz",
"sample_title": "PNY08",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "ed97220958ce7405de262e6f3c1340ba2a11ad6c2e70d07c94704a0d4f420e41",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17064,
"reads_skipped": 11067,
"elapsed_seconds": 1.2132519419999994,
"reads_submitted": 17064,
"reads_after_filter": 17064,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}