SRR23225772 · Gut microbiome
PNY09
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Victivallis vadensis | Victivallis | 18.0408 |
| Prevotella copri | Prevotella | 15.6344 |
| Muribaculum intestinale | Muribaculum | 12.5641 |
| Succinivibrio dextrinosolvens | Succinivibrio | 7.9344 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 4.8565 |
| Bacteroides caecigallinarum | Bacteroides | 2.8880 |
| Bacteroides helcogenes | Bacteroides | 2.5949 |
| Prevotella fusca | Prevotella | 2.5770 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.4420 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 2.2800 |
| Prevotella ruminicola | Prevotella | 1.9429 |
| Prevotella stercorea | Prevotella | 1.8107 |
| Bacteroides gallinaceus | Bacteroides | 1.7289 |
| Bacteroides caecicola | Bacteroides | 1.7094 |
| Prevotella jejuni | Prevotella | 1.6637 |
| Anaeromyxobacter dehalogenans | Anaeromyxobacter | 1.5957 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.5695 |
| Prevotella heparinolytica | Prevotella | 1.5278 |
| Prevotella loescheii | Prevotella | 1.3564 |
| Desulfovibrio piger | Desulfovibrio | 1.1917 |
| Prevotella oulorum | Prevotella | 1.1767 |
| Prevotella denticola | Prevotella | 1.1143 |
| Coprobacter secundus | Coprobacter | 1.0663 |
| Roseburia intestinalis | Roseburia | 0.9790 |
| Bacteroides uniformis | Bacteroides | 0.9507 |
| Prevotella melaninogenica | Prevotella | 0.9117 |
| Prevotella dentasini | Prevotella | 0.8806 |
| Bacteroides fluxus | Bacteroides | 0.8412 |
| Prevotella brevis | Prevotella | 0.8277 |
| Prevotella shahii | Prevotella | 0.7722 |
| Prevotella oryzae | Prevotella | 0.7299 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 0.7143 |
| Roseburia hominis | Roseburia | 0.7054 |
| Agathobaculum desmolans | Agathobaculum | 0.4211 |
Saved public metadata
{
"run_accession": "SRR23225772",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886399",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "18862",
"base_count": "27537926",
"fastq_bytes": "22425982",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/072/SRR23225772/SRR23225772_1.fastq.gz",
"sample_title": "PNY09",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "6263023cd8c07b79a56e3150d3ef4448b1a20bf2666948bdc33bf4d1a5e2e600",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 18862,
"reads_skipped": 14292,
"elapsed_seconds": 1.1116381539995928,
"reads_submitted": 18862,
"reads_after_filter": 18862,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}