SRR23225771 · Gut microbiome
PNY10
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 23.8680 |
| Faecalibacterium prausnitzii | Faecalibacterium | 22.7126 |
| Muribaculum intestinale | Muribaculum | 5.8673 |
| Victivallis vadensis | Victivallis | 4.6674 |
| Prevotella stercorea | Prevotella | 3.9788 |
| Methylacidimicrobium fagopyrum | Methylacidimicrobium | 3.3213 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 3.1134 |
| Prevotella ruminicola | Prevotella | 2.4698 |
| Prevotella jejuni | Prevotella | 2.3302 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.2649 |
| Roseburia intestinalis | Roseburia | 2.1715 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 2.1497 |
| Roseburia hominis | Roseburia | 2.1264 |
| Prevotella oulorum | Prevotella | 1.7530 |
| Anaerotignum faecicola | Anaerotignum | 1.7308 |
| Desulfovibrio piger | Desulfovibrio | 1.6548 |
| Prevotella fusca | Prevotella | 1.5285 |
| Methylacidimicrobium tartarophylax | Methylacidimicrobium | 1.4629 |
| Prevotella oris | Prevotella | 1.4116 |
| Desulfovibrio fairfieldensis | Desulfovibrio | 1.3401 |
| Prevotella loescheii | Prevotella | 1.0195 |
| Prevotella melaninogenica | Prevotella | 1.0110 |
| Roseburia inulinivorans | Roseburia | 0.9918 |
| Prevotella heparinolytica | Prevotella | 0.9242 |
| Prevotella brevis | Prevotella | 0.7802 |
| Prevotella oryzae | Prevotella | 0.7508 |
| Butyricicoccus faecihominis | Butyricicoccus | 0.6424 |
| Anaerostipes hadrus | Anaerostipes | 0.5834 |
| Marseilla massiliensis | Marseilla | 0.4790 |
| Streptococcus salivarius | Streptococcus | 0.4667 |
| Agathobaculum desmolans | Agathobaculum | 0.4278 |
Saved public metadata
{
"run_accession": "SRR23225771",
"study_accession": "PRJNA926923",
"sample_accession": "SAMN32886400",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "29384",
"base_count": "42927632",
"fastq_bytes": "34944427",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/071/SRR23225771/SRR23225771_1.fastq.gz",
"sample_title": "PNY10",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "cd4095546441acda3a0ed441172fc5dd0c33ab7e6368414aacdaaafee8f63854",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 14744,
"elapsed_seconds": 1.2454217730000892,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}