SRR22537724 · Gut microbiome
WMF20-1
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 19.5213 |
| Faecalibacterium prausnitzii | Faecalibacterium | 16.0579 |
| Limosilactobacillus reuteri | Limosilactobacillus | 10.2892 |
| Lactobacillus johnsonii | Lactobacillus | 8.1983 |
| Ruminococcus champanellensis | Ruminococcus | 7.0638 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 3.4338 |
| Ruminococcus callidus | Ruminococcus | 3.1452 |
| Ligilactobacillus animalis | Ligilactobacillus | 2.8260 |
| Succinivibrio dextrinosolvens | Succinivibrio | 2.4791 |
| Blautia producta | Blautia | 2.3695 |
| Blautia glucerasea | Blautia | 2.3401 |
| Ligilactobacillus murinus | Ligilactobacillus | 1.9184 |
| Prevotella ruminicola | Prevotella | 1.7873 |
| Prevotella stercorea | Prevotella | 1.6433 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.3938 |
| Prevotella jejuni | Prevotella | 1.2207 |
| Negativibacillus massiliensis | Negativibacillus | 1.0565 |
| Sarcina maxima | Sarcina | 1.0299 |
| Prevotella brevis | Prevotella | 0.9223 |
| Ruminococcus bromii | Ruminococcus | 0.8966 |
| Dorea formicigenerans | Dorea | 0.8531 |
| Intestinibacter bartlettii | Intestinibacter | 0.8293 |
| Prevotella oris | Prevotella | 0.8142 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.7061 |
| Ruminococcus flavefaciens | Ruminococcus | 0.6871 |
| Prevotella oulorum | Prevotella | 0.5700 |
| Prevotella oryzae | Prevotella | 0.5493 |
| Eshraghiella crossota | Eshraghiella | 0.5256 |
| Prevotella fusca | Prevotella | 0.5059 |
| Prevotella veroralis | Prevotella | 0.4719 |
| Blautia hansenii | Blautia | 0.4709 |
| Limosilactobacillus gorillae | Limosilactobacillus | 0.3953 |
| Prevotella melaninogenica | Prevotella | 0.3621 |
| Lactobacillus acetotolerans | Lactobacillus | 0.3427 |
| Christensenella massiliensis | Christensenella | 0.3281 |
| Christensenella minuta | Christensenella | 0.3066 |
| Prevotella heparinolytica | Prevotella | 0.3059 |
| Christensenella timonensis | Christensenella | 0.3024 |
| Prevotella bivia | Prevotella | 0.2837 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.2823 |
| Prevotella paludivivens | Prevotella | 0.2762 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.2380 |
Saved public metadata
{
"run_accession": "SRR22537724",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033795",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "24597",
"base_count": "35533662",
"fastq_bytes": "30353656",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/024/SRR22537724/SRR22537724_1.fastq.gz",
"sample_title": "WMF20-1",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "4de00b713992e9f48440df5748a660998fcaa2d61e80817717e8e4ad267043dd",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10290,
"elapsed_seconds": 1.5151346480001848,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}