SRR22537722 · Gut microbiome
WMF22-1
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 38.8226 |
| Faecalibacterium prausnitzii | Faecalibacterium | 18.0487 |
| Ruminococcus champanellensis | Ruminococcus | 3.6950 |
| Limosilactobacillus reuteri | Limosilactobacillus | 3.6886 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 3.1854 |
| Prevotella jejuni | Prevotella | 2.6657 |
| Ligilactobacillus animalis | Ligilactobacillus | 2.5812 |
| Blautia glucerasea | Blautia | 2.3016 |
| Ruminococcus callidus | Ruminococcus | 2.0814 |
| Ligilactobacillus murinus | Ligilactobacillus | 1.7638 |
| Prevotella stercorea | Prevotella | 1.7195 |
| Lactobacillus johnsonii | Lactobacillus | 1.5908 |
| Blautia producta | Blautia | 1.5664 |
| Negativibacillus massiliensis | Negativibacillus | 1.5628 |
| Lachnospira eligens | Lachnospira | 1.5624 |
| Prevotella ruminicola | Prevotella | 1.2454 |
| Prevotella brevis | Prevotella | 1.1058 |
| Prevotella melaninogenica | Prevotella | 1.0279 |
| Helicobacter fennelliae | Helicobacter | 0.7488 |
| Prevotella veroralis | Prevotella | 0.7395 |
| Prevotella oulorum | Prevotella | 0.7274 |
| Prevotella oris | Prevotella | 0.6790 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.6656 |
| Anaerostipes hadrus | Anaerostipes | 0.6194 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5917 |
| Dorea formicigenerans | Dorea | 0.5454 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.5125 |
| Prevotella oryzae | Prevotella | 0.4682 |
| Ruminococcus bromii | Ruminococcus | 0.4498 |
| Prevotella bivia | Prevotella | 0.4126 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 0.4068 |
| Blautia hansenii | Blautia | 0.3575 |
| Helicobacter macacae | Helicobacter | 0.3236 |
| Ligilactobacillus salivarius | Ligilactobacillus | 0.2681 |
| Prevotella fusca | Prevotella | 0.2600 |
| Eshraghiella crossota | Eshraghiella | 0.2216 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.2192 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.1968 |
| Prevotella heparinolytica | Prevotella | 0.1957 |
| Limosilactobacillus gorillae | Limosilactobacillus | 0.1756 |
Saved public metadata
{
"run_accession": "SRR22537722",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033797",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15092",
"base_count": "21888126",
"fastq_bytes": "18153110",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/022/SRR22537722/SRR22537722_1.fastq.gz",
"sample_title": "WMF22-1",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "ea1605f204dd77218479295703d87c6d39f41c507d4268838ef2d7c875c3b178",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15092,
"reads_skipped": 4110,
"elapsed_seconds": 1.3893952480002554,
"reads_submitted": 15092,
"reads_after_filter": 15092,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}