SRR22537708 · Gut microbiome
WMF01
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 35.6317 |
| Prevotella copri | Prevotella | 17.6606 |
| Blautia glucerasea | Blautia | 6.2971 |
| Blautia producta | Blautia | 3.9583 |
| Ruminococcus champanellensis | Ruminococcus | 3.4327 |
| Anaerostipes hadrus | Anaerostipes | 2.3490 |
| Bifidobacterium catenulatum | Bifidobacterium | 2.2155 |
| Prevotella stercorea | Prevotella | 2.0808 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.7054 |
| Prevotella jejuni | Prevotella | 1.6692 |
| Prevotella oryzae | Prevotella | 1.5722 |
| Dorea formicigenerans | Dorea | 1.5343 |
| Lactobacillus johnsonii | Lactobacillus | 1.4831 |
| Bifidobacterium angulatum | Bifidobacterium | 1.4382 |
| Prevotella oris | Prevotella | 1.3078 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 1.2866 |
| Prevotella ruminicola | Prevotella | 1.2198 |
| Ruminococcus callidus | Ruminococcus | 1.1912 |
| Prevotella brevis | Prevotella | 1.1006 |
| Prevotella oulorum | Prevotella | 0.9580 |
| Ruminococcus bromii | Ruminococcus | 0.9479 |
| Treponema bryantii | Treponema | 0.9148 |
| Gemmiger formicilis | Gemmiger | 0.8753 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.8183 |
| Prevotella paludivivens | Prevotella | 0.8011 |
| Prevotella veroralis | Prevotella | 0.6958 |
| Prevotella fusca | Prevotella | 0.6201 |
| Lactobacillus acidophilus | Lactobacillus | 0.6137 |
| Blautia hansenii | Blautia | 0.6131 |
| Bifidobacterium longum | Bifidobacterium | 0.6000 |
| Prevotella melaninogenica | Prevotella | 0.5561 |
| Subdoligranulum variabile | Subdoligranulum | 0.4979 |
| Treponema succinifaciens | Treponema | 0.4660 |
| Eshraghiella crossota | Eshraghiella | 0.4599 |
| Ruminococcus flavefaciens | Ruminococcus | 0.4277 |
Saved public metadata
{
"run_accession": "SRR22537708",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033810",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14326",
"base_count": "16411445",
"fastq_bytes": "14018993",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/008/SRR22537708/SRR22537708_1.fastq.gz",
"sample_title": "WMF01",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c0a09d17de0661303afa629e759fbc4c45a6b13ef8952b2cd07e320598326372",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1468.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14326,
"reads_skipped": 8344,
"elapsed_seconds": 1.1446989669999965,
"reads_submitted": 14326,
"reads_after_filter": 14326,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}