SRR22537707 · Gut microbiome
WMF10
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Lactobacillus johnsonii | Lactobacillus | 34.6781 |
| Limosilactobacillus reuteri | Limosilactobacillus | 20.3654 |
| Faecalibacterium prausnitzii | Faecalibacterium | 14.2408 |
| Prevotella copri | Prevotella | 4.8240 |
| Muribaculum intestinale | Muribaculum | 2.6020 |
| Prevotella fusca | Prevotella | 2.0850 |
| Blautia glucerasea | Blautia | 1.9299 |
| Ruminococcus champanellensis | Ruminococcus | 1.6705 |
| Prevotella dentasini | Prevotella | 1.5843 |
| Blautia producta | Blautia | 1.2672 |
| Bacteroides gallinaceus | Bacteroides | 1.1452 |
| Anaerostipes hadrus | Anaerostipes | 0.9237 |
| Lactobacillus acetotolerans | Lactobacillus | 0.8836 |
| Prevotella denticola | Prevotella | 0.8713 |
| Sphaerochaeta globosa | Sphaerochaeta | 0.8449 |
| Bacteroides cellulosilyticus | Bacteroides | 0.8035 |
| Helicobacter fennelliae | Helicobacter | 0.7006 |
| Prevotella jejuni | Prevotella | 0.6857 |
| Treponema succinifaciens | Treponema | 0.6697 |
| Prevotella heparinolytica | Prevotella | 0.6516 |
| Dialister hominis | Dialister | 0.6491 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.6388 |
| Bifidobacterium catenulatum | Bifidobacterium | 0.6285 |
| Bacteroides uniformis | Bacteroides | 0.5678 |
| Ruminococcus callidus | Ruminococcus | 0.5432 |
| Lactobacillus amylovorus | Lactobacillus | 0.5079 |
| Roseburia hominis | Roseburia | 0.4910 |
| Prevotella brevis | Prevotella | 0.4887 |
| Bacteroides fluxus | Bacteroides | 0.4237 |
| Prevotella oris | Prevotella | 0.3898 |
| Blautia hansenii | Blautia | 0.2936 |
| Prevotella ruminicola | Prevotella | 0.2595 |
| Lactobacillus delbrueckii | Lactobacillus | 0.2495 |
| Lactobacillus gasseri | Lactobacillus | 0.2463 |
| Agathobaculum desmolans | Agathobaculum | 0.1958 |
Saved public metadata
{
"run_accession": "SRR22537707",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033811",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "20637",
"base_count": "23344884",
"fastq_bytes": "19504851",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/007/SRR22537707/SRR22537707_1.fastq.gz",
"sample_title": "WMF10",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7c1ce25d66fe18e5c9a3cb9d5d5f0627f22337fc03c0814ad1b3aef21ec95d63",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1473.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10130,
"elapsed_seconds": 1.618180234999727,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}