SRR22537706 · Gut microbiome
WMF11
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus reuteri | Limosilactobacillus | 26.0721 |
| Lactobacillus johnsonii | Lactobacillus | 14.5837 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.0761 |
| Prevotella copri | Prevotella | 9.2472 |
| Bifidobacterium catenulatum | Bifidobacterium | 4.5105 |
| Bifidobacterium adolescentis | Bifidobacterium | 3.4703 |
| Lactobacillus amylovorus | Lactobacillus | 2.5753 |
| Bifidobacterium angulatum | Bifidobacterium | 2.2890 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 1.9640 |
| Blautia glucerasea | Blautia | 1.8775 |
| Prevotella fusca | Prevotella | 1.7788 |
| Lactobacillus acidophilus | Lactobacillus | 1.5567 |
| Ruminococcus champanellensis | Ruminococcus | 1.4917 |
| Bifidobacterium longum | Bifidobacterium | 1.2418 |
| Prevotella stercorea | Prevotella | 1.1771 |
| Blautia producta | Blautia | 1.1428 |
| Limosilactobacillus mucosae | Limosilactobacillus | 1.1224 |
| Prevotella dentasini | Prevotella | 1.0963 |
| Lactobacillus helveticus | Lactobacillus | 0.7989 |
| Bacteroides gallinaceus | Bacteroides | 0.7288 |
| Lactobacillus acetotolerans | Lactobacillus | 0.6979 |
| Bifidobacterium indicum | Bifidobacterium | 0.6346 |
| Prevotella jejuni | Prevotella | 0.6239 |
| Prevotella oris | Prevotella | 0.5796 |
| Anaerostipes hadrus | Anaerostipes | 0.5503 |
| Bacteroides uniformis | Bacteroides | 0.5018 |
| Prevotella brevis | Prevotella | 0.5014 |
| Prevotella denticola | Prevotella | 0.4894 |
| Prevotella ruminicola | Prevotella | 0.4015 |
| Ruminococcus callidus | Ruminococcus | 0.3977 |
| Prevotella oryzae | Prevotella | 0.3805 |
| Gemmiger formicilis | Gemmiger | 0.3769 |
| Bacteroides cellulosilyticus | Bacteroides | 0.3718 |
| Intestinibacter bartlettii | Intestinibacter | 0.3669 |
| Prevotella melaninogenica | Prevotella | 0.3636 |
| Prevotella paludivivens | Prevotella | 0.3375 |
| Prevotella oulorum | Prevotella | 0.3280 |
| Bacteroides fluxus | Bacteroides | 0.2775 |
| Lactobacillus delbrueckii | Lactobacillus | 0.2697 |
| Bifidobacterium minimum | Bifidobacterium | 0.2619 |
| Treponema succinifaciens | Treponema | 0.2590 |
| Blautia hansenii | Blautia | 0.2281 |
Saved public metadata
{
"run_accession": "SRR22537706",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033812",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17682",
"base_count": "20075318",
"fastq_bytes": "16934530",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/006/SRR22537706/SRR22537706_1.fastq.gz",
"sample_title": "WMF11",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "767f4875ef955631369769f6fbf95c1a4a988812b6c89de41d1f7d6256b9096f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1474.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17682,
"reads_skipped": 8287,
"elapsed_seconds": 1.4130560940002397,
"reads_submitted": 17682,
"reads_after_filter": 17682,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}