SRR22537705 · Gut microbiome
WMF12
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Helicobacter fennelliae | Helicobacter | 47.0173 |
| Faecalibacterium prausnitzii | Faecalibacterium | 5.1872 |
| Prevotella stercorea | Prevotella | 5.0355 |
| Helicobacter pametensis | Helicobacter | 4.2596 |
| Helicobacter acinonychis | Helicobacter | 3.7171 |
| Prevotella copri | Prevotella | 3.6443 |
| Helicobacter aurati | Helicobacter | 2.8682 |
| Ruminococcus champanellensis | Ruminococcus | 2.1838 |
| Helicobacter hepaticus | Helicobacter | 2.1335 |
| Helicobacter cholecystus | Helicobacter | 2.0842 |
| Hominimerdicola aceti | Hominimerdicola | 2.0450 |
| Helicobacter brantae | Helicobacter | 1.9222 |
| Blautia glucerasea | Blautia | 1.7544 |
| Helicobacter bilis | Helicobacter | 1.5221 |
| Helicobacter pylori | Helicobacter | 1.3784 |
| Prevotella buccalis | Prevotella | 1.3201 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.2068 |
| Helicobacter macacae | Helicobacter | 1.1439 |
| Prevotella loescheii | Prevotella | 0.8790 |
| Helicobacter apodemus | Helicobacter | 0.8494 |
| Prevotella oris | Prevotella | 0.6601 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.5924 |
| Prevotella saccharolytica | Prevotella | 0.5864 |
| Hominimerdicola alba | Hominimerdicola | 0.5726 |
| Blautia producta | Blautia | 0.4927 |
| Prevotella jejuni | Prevotella | 0.4926 |
| Prevotella oryzae | Prevotella | 0.4852 |
| Prevotella ruminicola | Prevotella | 0.4767 |
| Prevotella brevis | Prevotella | 0.4217 |
| Prevotella albensis | Prevotella | 0.3687 |
| Prevotella veroralis | Prevotella | 0.2846 |
| Sphaerochaeta globosa | Sphaerochaeta | 0.2538 |
| Prevotella bivia | Prevotella | 0.2244 |
| Helicobacter mustelae | Helicobacter | 0.2080 |
| Prevotella denticola | Prevotella | 0.2069 |
| Helicobacter pullorum | Helicobacter | 0.1974 |
| Blautia hansenii | Blautia | 0.1941 |
| Prevotella melaninogenica | Prevotella | 0.1923 |
| Prevotella heparinolytica | Prevotella | 0.1868 |
| Ruminococcus bromii | Ruminococcus | 0.1712 |
| Prevotella buccae | Prevotella | 0.1669 |
| Prevotella colorans | Prevotella | 0.1648 |
| Ruminococcus callidus | Ruminococcus | 0.1582 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.0896 |
Saved public metadata
{
"run_accession": "SRR22537705",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033813",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "18502",
"base_count": "23370940",
"fastq_bytes": "18408862",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/005/SRR22537705/SRR22537705_1.fastq.gz",
"sample_title": "WMF12",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "37fd0adfeea890242020fb08a10f7a75e955e618910946423eb33dd2cbce802d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1456.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 18502,
"reads_skipped": 5040,
"elapsed_seconds": 1.6491836510000013,
"reads_submitted": 18502,
"reads_after_filter": 18502,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}