SRR22537703 · Gut microbiome
WMF13
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 24.0469 |
| Lactobacillus johnsonii | Lactobacillus | 20.2451 |
| Limosilactobacillus reuteri | Limosilactobacillus | 10.3512 |
| Ruminococcus champanellensis | Ruminococcus | 8.9192 |
| Blautia glucerasea | Blautia | 5.6432 |
| Ruminococcus callidus | Ruminococcus | 4.5000 |
| Streptococcus equinus | Streptococcus | 2.7009 |
| Blautia producta | Blautia | 2.6807 |
| Lachnospira eligens | Lachnospira | 2.5973 |
| Prevotella copri | Prevotella | 2.2063 |
| Roseburia hominis | Roseburia | 2.1367 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.6538 |
| Dorea formicigenerans | Dorea | 1.4809 |
| Muribaculum intestinale | Muribaculum | 1.4638 |
| Roseburia intestinalis | Roseburia | 1.3728 |
| Ruminococcus bromii | Ruminococcus | 1.3411 |
| Blautia hansenii | Blautia | 0.7279 |
| Prevotella jejuni | Prevotella | 0.5509 |
| Ruminococcus flavefaciens | Ruminococcus | 0.5137 |
| Streptococcus salivarius | Streptococcus | 0.4717 |
| Lactobacillus acetotolerans | Lactobacillus | 0.4435 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 0.4134 |
| Prevotella ruminicola | Prevotella | 0.3458 |
| Prevotella stercorea | Prevotella | 0.3393 |
| Roseburia inulinivorans | Roseburia | 0.3250 |
| Streptococcus mitis | Streptococcus | 0.3228 |
| Gemmiger formicilis | Gemmiger | 0.3154 |
| Streptococcus lutetiensis | Streptococcus | 0.2895 |
| Prevotella heparinolytica | Prevotella | 0.2882 |
| Blautia luti | Blautia | 0.2774 |
| Roseburia faecis | Roseburia | 0.2594 |
| Streptococcus gallolyticus | Streptococcus | 0.2393 |
| Lactobacillus delbrueckii | Lactobacillus | 0.2030 |
| Lachnospira pectinoschiza | Lachnospira | 0.1729 |
| Streptococcus infantarius | Streptococcus | 0.1611 |
Saved public metadata
{
"run_accession": "SRR22537703",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033814",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "22463",
"base_count": "27003856",
"fastq_bytes": "22395626",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/003/SRR22537703/SRR22537703_1.fastq.gz",
"sample_title": "WMF13",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "43bee952e74d7bf2a46324ce7eab4a9d917c95856edbdc93dfa53a165e9a249a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1476.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6576,
"elapsed_seconds": 1.6994326169999994,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 4,
"fraction": 0.02,
"adapters_found": {
"BC_FLANK": 4
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}