SRR22537696 · Gut microbiome
WMF20
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 16.5321 |
| Clostridium saudiense | Clostridium | 15.7891 |
| Intestinimonas butyriciproducens | Intestinimonas | 11.1189 |
| Blautia glucerasea | Blautia | 7.6719 |
| Lactobacillus johnsonii | Lactobacillus | 5.0160 |
| Blautia producta | Blautia | 4.5878 |
| Muribaculum intestinale | Muribaculum | 4.2015 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.6013 |
| Clostridium isatidis | Clostridium | 3.4281 |
| Ruminococcus champanellensis | Ruminococcus | 3.2406 |
| Collinsella aerofaciens | Collinsella | 3.1083 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 2.9488 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.8082 |
| Clostridium phytofermentans | Clostridium | 2.1523 |
| Clostridium septicum | Clostridium | 1.7665 |
| Catenibacterium mitsuokai | Catenibacterium | 1.6506 |
| Clostridium beijerinckii | Clostridium | 1.5476 |
| Butyricicoccus faecihominis | Butyricicoccus | 1.3724 |
| Clostridium botulinum | Clostridium | 1.2538 |
| Blautia hansenii | Blautia | 1.2456 |
| Clostridium carnis | Clostridium | 1.2004 |
| Clostridium merdae | Clostridium | 0.8001 |
| Dorea formicigenerans | Dorea | 0.7717 |
| Eshraghiella crossota | Eshraghiella | 0.7074 |
| Coprococcus eutactus | Coprococcus | 0.6860 |
| Intestinibacter bartlettii | Intestinibacter | 0.5788 |
| Actinobacillus capsulatus | Actinobacillus | 0.2144 |
Saved public metadata
{
"run_accession": "SRR22537696",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033821",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15222",
"base_count": "18717206",
"fastq_bytes": "15841063",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/096/SRR22537696/SRR22537696_1.fastq.gz",
"sample_title": "WMF20",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "1fb4833dcb79d424b750895b6d5cecfc4d3eb1d54d4b25e6dc1f11344dd944de",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1475.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15222,
"reads_skipped": 10358,
"elapsed_seconds": 1.2846580740001627,
"reads_submitted": 15222,
"reads_after_filter": 15222,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}