SRR22537695 · Gut microbiome
WMF21
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bifidobacterium catenulatum | Bifidobacterium | 29.1813 |
| Bifidobacterium angulatum | Bifidobacterium | 15.7191 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 12.2730 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.0842 |
| Bifidobacterium longum | Bifidobacterium | 3.9089 |
| Bifidobacterium indicum | Bifidobacterium | 3.5031 |
| Collinsella aerofaciens | Collinsella | 2.7137 |
| Bacteroides gallinaceus | Bacteroides | 2.6313 |
| Bifidobacterium adolescentis | Bifidobacterium | 2.2633 |
| Blautia glucerasea | Blautia | 2.1777 |
| Bacteroides uniformis | Bacteroides | 1.6439 |
| Bifidobacterium minimum | Bifidobacterium | 1.3764 |
| Sphaerochaeta globosa | Sphaerochaeta | 1.2826 |
| Bifidobacterium rousetti | Bifidobacterium | 1.2760 |
| Blautia producta | Blautia | 0.9019 |
| Parolsenella massiliensis | Parolsenella | 0.7470 |
| Parolsenella catena | Parolsenella | 0.6402 |
| Bifidobacterium myosotis | Bifidobacterium | 0.6277 |
| Bifidobacterium gallinarum | Bifidobacterium | 0.6141 |
| Bifidobacterium merycicum | Bifidobacterium | 0.6079 |
| Bifidobacterium ruminantium | Bifidobacterium | 0.5768 |
| Bifidobacterium moukalabense | Bifidobacterium | 0.5718 |
| Intestinibacter bartlettii | Intestinibacter | 0.5599 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4762 |
| Bacteroides fluxus | Bacteroides | 0.4535 |
| Collinsella bouchesdurhonensis | Collinsella | 0.4189 |
| Collinsella stercoris | Collinsella | 0.4028 |
| Flavobacterium oceanosedimentum | Flavobacterium | 0.3945 |
| Sphaerochaeta coccoides | Sphaerochaeta | 0.3590 |
| Collinsella intestinalis | Collinsella | 0.3333 |
| Senegalimassilia anaerobia | Senegalimassilia | 0.2800 |
Saved public metadata
{
"run_accession": "SRR22537695",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033822",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "21303",
"base_count": "24251555",
"fastq_bytes": "20210969",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/095/SRR22537695/SRR22537695_1.fastq.gz",
"sample_title": "WMF21",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3a0dfe981fc82cc1470eb08a96cbc1be423ccb4b1dc3dc0dd1b83975520bf3a1",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1470.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 12060,
"elapsed_seconds": 1.3827989449999976,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}