SRR22537693 · Gut microbiome
WMF13-1
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Helicobacter fennelliae | Helicobacter | 52.1122 |
| Helicobacter macacae | Helicobacter | 12.1645 |
| Faecalibacterium prausnitzii | Faecalibacterium | 3.9752 |
| Helicobacter acinonychis | Helicobacter | 3.8203 |
| Helicobacter aurati | Helicobacter | 3.6604 |
| Helicobacter cholecystus | Helicobacter | 3.0866 |
| Prevotella copri | Prevotella | 3.0572 |
| Helicobacter brantae | Helicobacter | 2.3260 |
| Helicobacter hepaticus | Helicobacter | 2.1341 |
| Helicobacter bilis | Helicobacter | 1.6172 |
| Helicobacter apodemus | Helicobacter | 1.5873 |
| Helicobacter pametensis | Helicobacter | 1.3926 |
| Helicobacter pylori | Helicobacter | 1.3837 |
| Ruminococcus champanellensis | Ruminococcus | 1.0997 |
| Campylobacter avium | Campylobacter | 1.0542 |
| Helicobacter marmotae | Helicobacter | 1.0350 |
| Helicobacter pullorum | Helicobacter | 0.6899 |
| Helicobacter muridarum | Helicobacter | 0.6681 |
| Roseburia hominis | Roseburia | 0.5648 |
| Helicobacter typhlonius | Helicobacter | 0.5553 |
| Prevotella stercorea | Prevotella | 0.4725 |
| Ruminococcus callidus | Ruminococcus | 0.4237 |
| Campylobacter helveticus | Campylobacter | 0.3588 |
| Prevotella ruminicola | Prevotella | 0.3059 |
| Ligilactobacillus animalis | Ligilactobacillus | 0.2745 |
| Brachyspira intermedia | Brachyspira | 0.1804 |
Saved public metadata
{
"run_accession": "SRR22537693",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033788",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14941",
"base_count": "21502909",
"fastq_bytes": "15881888",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/093/SRR22537693/SRR22537693_1.fastq.gz",
"sample_title": "WMF13-1",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c0620a01dd9c2fbea5cc0aba497ca209514db051dc61bee7869e6130aea9b80d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1458,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14941,
"reads_skipped": 2022,
"elapsed_seconds": 1.480456421999996,
"reads_submitted": 14941,
"reads_after_filter": 14941,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}