SRR22537691 · Gut microbiome
WMF24
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 24.8710 |
| Blautia glucerasea | Blautia | 14.0700 |
| Blautia producta | Blautia | 7.7318 |
| Prevotella copri | Prevotella | 6.4937 |
| Butyricicoccus pullicaecorum | Butyricicoccus | 6.3260 |
| Muribaculum intestinale | Muribaculum | 4.8791 |
| Dorea formicigenerans | Dorea | 3.6194 |
| Ruminococcus champanellensis | Ruminococcus | 3.4149 |
| Butyricicoccus faecihominis | Butyricicoccus | 3.3037 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.9578 |
| Blautia hansenii | Blautia | 2.4777 |
| Roseburia hominis | Roseburia | 1.7931 |
| Prevotella fusca | Prevotella | 1.5999 |
| Alistipes putredinis | Alistipes | 1.5131 |
| Roseburia intestinalis | Roseburia | 1.3486 |
| Prevotella oryzae | Prevotella | 1.2204 |
| Prevotella oulorum | Prevotella | 1.1097 |
| Alistipes dispar | Alistipes | 1.0554 |
| Coprococcus eutactus | Coprococcus | 1.0517 |
| Prevotella heparinolytica | Prevotella | 1.0254 |
| Prevotella stercorea | Prevotella | 0.9729 |
| Prevotella jejuni | Prevotella | 0.9361 |
| Prevotella brevis | Prevotella | 0.9311 |
| Prevotella dentasini | Prevotella | 0.7754 |
| Blautia luti | Blautia | 0.7590 |
| Flavobacterium oceanosedimentum | Flavobacterium | 0.7589 |
| Ruminococcus callidus | Ruminococcus | 0.6919 |
| Prevotella ruminicola | Prevotella | 0.6440 |
| Allocoprococcus comes | Allocoprococcus | 0.5449 |
| Eshraghiella crossota | Eshraghiella | 0.4670 |
| Ruminococcus bromii | Ruminococcus | 0.4033 |
| Fibrobacter succinogenes | Fibrobacter | 0.2530 |
Saved public metadata
{
"run_accession": "SRR22537691",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033825",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "19664",
"base_count": "21937800",
"fastq_bytes": "18679585",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/091/SRR22537691/SRR22537691_1.fastq.gz",
"sample_title": "WMF24",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "a14bf4efee4846b19f887d8cee722d0ec07ec4911027e4082741b0b3ec795a04",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1470.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 19664,
"reads_skipped": 14456,
"elapsed_seconds": 1.1918296579999996,
"reads_submitted": 19664,
"reads_after_filter": 19664,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}