SRR22537690 · Gut microbiome
WMF26
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 24.6987 |
| Lactobacillus johnsonii | Lactobacillus | 11.8921 |
| Prevotella copri | Prevotella | 10.8075 |
| Muribaculum intestinale | Muribaculum | 5.1507 |
| Limosilactobacillus reuteri | Limosilactobacillus | 4.5320 |
| Dialister hominis | Dialister | 3.1992 |
| Ruminococcus champanellensis | Ruminococcus | 3.1293 |
| Prevotella stercorea | Prevotella | 2.8133 |
| Helicobacter fennelliae | Helicobacter | 2.6646 |
| Dorea formicigenerans | Dorea | 2.5761 |
| Anaerostipes hadrus | Anaerostipes | 2.4419 |
| Roseburia hominis | Roseburia | 2.2183 |
| Eshraghiella crossota | Eshraghiella | 1.8168 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.4052 |
| Prevotella jejuni | Prevotella | 1.2220 |
| Prevotella oris | Prevotella | 1.1512 |
| Helicobacter macacae | Helicobacter | 1.1313 |
| Roseburia intestinalis | Roseburia | 1.1147 |
| Prevotella brevis | Prevotella | 1.0517 |
| Bifidobacterium catenulatum | Bifidobacterium | 1.0232 |
| Collinsella aerofaciens | Collinsella | 0.9836 |
| Prevotella ruminicola | Prevotella | 0.8904 |
| Prevotella loescheii | Prevotella | 0.8876 |
| Prevotella heparinolytica | Prevotella | 0.8606 |
| Ruminococcus callidus | Ruminococcus | 0.8324 |
| Prevotella oryzae | Prevotella | 0.7958 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.7911 |
| Prevotella oulorum | Prevotella | 0.7473 |
| Prevotella fusca | Prevotella | 0.7238 |
| Helicobacter brantae | Helicobacter | 0.6088 |
| Helicobacter pametensis | Helicobacter | 0.5601 |
| Prevotella melaninogenica | Prevotella | 0.5454 |
| Prevotella paludivivens | Prevotella | 0.5173 |
| Agathobaculum desmolans | Agathobaculum | 0.5152 |
| Anaerostipes butyraticus | Anaerostipes | 0.4858 |
| Prevotella buccalis | Prevotella | 0.4688 |
| Gemmiger formicilis | Gemmiger | 0.4517 |
| Lactobacillus acetotolerans | Lactobacillus | 0.4064 |
| Dialister succinatiphilus | Dialister | 0.3917 |
| Prevotella dentasini | Prevotella | 0.3908 |
| Bifidobacterium angulatum | Bifidobacterium | 0.3760 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 0.3702 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.3591 |
Saved public metadata
{
"run_accession": "SRR22537690",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033826",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "20029",
"base_count": "21424528",
"fastq_bytes": "18498030",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/090/SRR22537690/SRR22537690_1.fastq.gz",
"sample_title": "WMF26",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9f460ad0f68afeb92fb22c8982a2cf749fc0be2fde8488ef55a83912fab62107",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1466.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 13452,
"elapsed_seconds": 1.4099220320000008,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}