SRR22537686 · Gut microbiome
WMF04
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 43.1667 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.1133 |
| Bifidobacterium adolescentis | Bifidobacterium | 6.0976 |
| Prevotella stercorea | Prevotella | 5.7333 |
| Prevotella jejuni | Prevotella | 2.6857 |
| Ruminococcus champanellensis | Ruminococcus | 2.2811 |
| Prevotella fusca | Prevotella | 1.9108 |
| Prevotella ruminicola | Prevotella | 1.8659 |
| Prevotella brevis | Prevotella | 1.7706 |
| Prevotella oris | Prevotella | 1.6848 |
| Prevotella oulorum | Prevotella | 1.6822 |
| Blautia glucerasea | Blautia | 1.5519 |
| Prevotella oryzae | Prevotella | 1.5244 |
| Prevotella melaninogenica | Prevotella | 1.2613 |
| Anaerostipes hadrus | Anaerostipes | 1.1673 |
| Treponema succinifaciens | Treponema | 1.1407 |
| Prevotella paludivivens | Prevotella | 1.1391 |
| Dorea formicigenerans | Dorea | 1.0346 |
| Blautia producta | Blautia | 0.9020 |
| Prevotella veroralis | Prevotella | 0.8843 |
| Bifidobacterium longum | Bifidobacterium | 0.8224 |
| Prevotella bivia | Prevotella | 0.7275 |
| Bifidobacterium catenulatum | Bifidobacterium | 0.6672 |
| Prevotella buccalis | Prevotella | 0.5740 |
| Prevotella dentasini | Prevotella | 0.5350 |
| Prevotella denticola | Prevotella | 0.5347 |
| Ruminococcus callidus | Ruminococcus | 0.5244 |
| Bacteroides uniformis | Bacteroides | 0.5022 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4981 |
| Ruminococcus bromii | Ruminococcus | 0.4841 |
| Roseburia hominis | Roseburia | 0.4775 |
| Bacteroides helcogenes | Bacteroides | 0.4454 |
| Bacteroides acidifaciens | Bacteroides | 0.4437 |
| Prevotella corporis | Prevotella | 0.4395 |
| Bacteroides gallinaceus | Bacteroides | 0.4087 |
| Prevotella salivae | Prevotella | 0.3719 |
| Prevotella dentalis | Prevotella | 0.3295 |
| Prevotella heparinolytica | Prevotella | 0.3227 |
| Ruminococcus flavefaciens | Ruminococcus | 0.2940 |
Saved public metadata
{
"run_accession": "SRR22537686",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033830",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15603",
"base_count": "16746522",
"fastq_bytes": "14011056",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/086/SRR22537686/SRR22537686_1.fastq.gz",
"sample_title": "WMF04",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9fe12cb4c2fad7d7895813063352830aec8473d2bb4b706a9de87f73530d5786",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1468,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15603,
"reads_skipped": 7958,
"elapsed_seconds": 1.5166201469999692,
"reads_submitted": 15603,
"reads_after_filter": 15603,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}