SRR22537685 · Gut microbiome
WMF05
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Coprobacter secundus | Coprobacter | 17.1273 |
| Prevotella copri | Prevotella | 10.7783 |
| Treponema succinifaciens | Treponema | 8.2122 |
| Prevotella fusca | Prevotella | 7.8207 |
| Muribaculum intestinale | Muribaculum | 5.0461 |
| Ruminococcus champanellensis | Ruminococcus | 4.2600 |
| Sphaerochaeta globosa | Sphaerochaeta | 3.9786 |
| Prevotella stercorea | Prevotella | 3.0910 |
| Treponema bryantii | Treponema | 2.8963 |
| Bacteroides uniformis | Bacteroides | 2.2301 |
| Bacteroides fluxus | Bacteroides | 2.1243 |
| Roseburia hominis | Roseburia | 2.0298 |
| Alkaliflexus imshenetskii | Alkaliflexus | 1.9526 |
| Prevotella dentasini | Prevotella | 1.8945 |
| Coprococcus eutactus | Coprococcus | 1.8488 |
| Bacteroides gallinaceus | Bacteroides | 1.8464 |
| Gemmiger formicilis | Gemmiger | 1.7751 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.7726 |
| Bacteroides cellulosilyticus | Bacteroides | 1.7587 |
| Prevotella jejuni | Prevotella | 1.7247 |
| Prevotella oris | Prevotella | 1.6120 |
| Subdoligranulum variabile | Subdoligranulum | 1.5524 |
| Prevotella brevis | Prevotella | 1.4937 |
| Prevotella heparinolytica | Prevotella | 1.4692 |
| Flavobacterium oceanosedimentum | Flavobacterium | 1.1831 |
| Prevotella melaninogenica | Prevotella | 1.0115 |
| Ruminococcus callidus | Ruminococcus | 0.9855 |
| Prevotella ruminicola | Prevotella | 0.9757 |
| Eshraghiella crossota | Eshraghiella | 0.9613 |
| Roseburia intestinalis | Roseburia | 0.8541 |
| Bacteroides caecicola | Bacteroides | 0.8477 |
| Prevotella denticola | Prevotella | 0.7358 |
| Ruminococcus bromii | Ruminococcus | 0.7194 |
| Coprobacter fastidiosus | Coprobacter | 0.6173 |
| Bacteroides zoogleoformans | Bacteroides | 0.5421 |
| Spirosoma lacussanchae | Spirosoma | 0.2711 |
Saved public metadata
{
"run_accession": "SRR22537685",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033831",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15736",
"base_count": "17852552",
"fastq_bytes": "15212290",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/085/SRR22537685/SRR22537685_1.fastq.gz",
"sample_title": "WMF05",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "6f5f45d0fac357e11b1d4dfcbaedef3d24ac739fb15c6f48f6879259b16ddeae",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1470.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15736,
"reads_skipped": 11635,
"elapsed_seconds": 1.2544904149999923,
"reads_submitted": 15736,
"reads_after_filter": 15736,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}