SRR22537682 · Gut microbiome
WMF14-1
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Helicobacter macacae | Helicobacter | 35.8148 |
| Faecalibacterium prausnitzii | Faecalibacterium | 14.7620 |
| Prevotella stercorea | Prevotella | 9.2644 |
| Prevotella copri | Prevotella | 5.5598 |
| Helicobacter fennelliae | Helicobacter | 4.7203 |
| Brachyspira intermedia | Brachyspira | 3.5369 |
| Lachnospira eligens | Lachnospira | 2.8184 |
| Blautia glucerasea | Blautia | 1.6645 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.5381 |
| Brachyspira hyodysenteriae | Brachyspira | 1.5042 |
| Helicobacter typhlonius | Helicobacter | 1.4987 |
| Helicobacter hepaticus | Helicobacter | 1.3444 |
| Helicobacter apodemus | Helicobacter | 1.0792 |
| Dysosmobacter welbionis | Dysosmobacter | 1.0566 |
| Blautia producta | Blautia | 0.9848 |
| Prevotella ruminicola | Prevotella | 0.9440 |
| Helicobacter pylori | Helicobacter | 0.7425 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.7393 |
| Helicobacter pametensis | Helicobacter | 0.7231 |
| Helicobacter marmotae | Helicobacter | 0.6983 |
| Anaerostipes hadrus | Anaerostipes | 0.6360 |
| Helicobacter acinonychis | Helicobacter | 0.5955 |
| Prevotella brevis | Prevotella | 0.5889 |
| Helicobacter bilis | Helicobacter | 0.5835 |
| Prevotella oris | Prevotella | 0.5621 |
| Prevotella loescheii | Prevotella | 0.5540 |
| Brachyspira innocens | Brachyspira | 0.5468 |
| Campylobacter avium | Campylobacter | 0.5369 |
| Helicobacter pullorum | Helicobacter | 0.5110 |
| Prevotella melaninogenica | Prevotella | 0.5087 |
| Helicobacter aurati | Helicobacter | 0.4459 |
| Helicobacter cholecystus | Helicobacter | 0.3914 |
| Prevotella buccalis | Prevotella | 0.3708 |
| Brachyspira pilosicoli | Brachyspira | 0.3488 |
| Prevotella heparinolytica | Prevotella | 0.3456 |
| Campylobacter helveticus | Campylobacter | 0.2735 |
| Desulfovibrio piger | Desulfovibrio | 0.2667 |
| Prevotella nigrescens | Prevotella | 0.2595 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.2462 |
| Brachyspira murdochii | Brachyspira | 0.2389 |
| Parabacteroides merdae | Parabacteroides | 0.1949 |
Saved public metadata
{
"run_accession": "SRR22537682",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033789",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "12902",
"base_count": "19222043",
"fastq_bytes": "15776859",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/082/SRR22537682/SRR22537682_1.fastq.gz",
"sample_title": "WMF14-1",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7e46ad42d1403b282779fb5771a34cc87156dabbab04394251bedc00ed254150",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12902,
"reads_skipped": 3060,
"elapsed_seconds": 1.2178538540001682,
"reads_submitted": 12902,
"reads_after_filter": 12902,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}