SRR22537680 · Gut microbiome
WMF09
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 17.7702 |
| Terrisporobacter mayombei | Terrisporobacter | 7.2663 |
| Muribaculum intestinale | Muribaculum | 5.9871 |
| Clostridium saudiense | Clostridium | 5.8750 |
| Clostridium tarantellae | Clostridium | 4.8326 |
| Ruminococcus champanellensis | Ruminococcus | 4.5800 |
| Blautia producta | Blautia | 4.1771 |
| Blautia glucerasea | Blautia | 4.1049 |
| Clostridium beijerinckii | Clostridium | 4.0381 |
| Bacteroides gallinaceus | Bacteroides | 3.7179 |
| Clostridium isatidis | Clostridium | 3.0447 |
| Clostridium phytofermentans | Clostridium | 2.5675 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.1966 |
| Bacteroides uniformis | Bacteroides | 2.1082 |
| Lactobacillus johnsonii | Lactobacillus | 2.0593 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.8671 |
| Clostridium botulinum | Clostridium | 1.8145 |
| Intestinibacter bartlettii | Intestinibacter | 1.6487 |
| Clostridium saccharobutylicum | Clostridium | 1.5003 |
| Clostridium septicum | Clostridium | 1.4926 |
| Clostridium paraputrificum | Clostridium | 1.4915 |
| Bacteroides cellulosilyticus | Bacteroides | 1.4239 |
| Clostridium carnis | Clostridium | 1.4004 |
| Ruminococcus callidus | Ruminococcus | 1.1600 |
| Clostridium merdae | Clostridium | 1.0976 |
| Clostridium butyricum | Clostridium | 1.0683 |
| Blautia hansenii | Blautia | 0.9986 |
| Bacteroides caecicola | Bacteroides | 0.9858 |
| Sarcina ventriculi | Sarcina | 0.9244 |
| Gemmiger formicilis | Gemmiger | 0.9062 |
| Clostridium fallax | Clostridium | 0.7957 |
| Ruminococcus bromii | Ruminococcus | 0.7870 |
| Dorea formicigenerans | Dorea | 0.7139 |
| Clostridium baratii | Clostridium | 0.7121 |
| Clostridium perfringens | Clostridium | 0.7033 |
| Clostridium sardiniense | Clostridium | 0.5860 |
| Terrisporobacter petrolearius | Terrisporobacter | 0.5808 |
| Flavobacterium oceanosedimentum | Flavobacterium | 0.5217 |
| Flintibacter butyricus | Flintibacter | 0.4942 |
Saved public metadata
{
"run_accession": "SRR22537680",
"study_accession": "PRJNA908263",
"sample_accession": "SAMN32033835",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17269",
"base_count": "19711630",
"fastq_bytes": "16609095",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR225/080/SRR22537680/SRR22537680_1.fastq.gz",
"sample_title": "WMF09",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3cc9a52476dc39591c7c243c8ec73e3857005c16795225b162e02b1ce2970a77",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1469,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17269,
"reads_skipped": 13532,
"elapsed_seconds": 1.6070733660000087,
"reads_submitted": 17269,
"reads_after_filter": 17269,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}