SRR22464782 · Gut microbiome
D23-Probiotic 0H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus fermentum | Limosilactobacillus | 63.7809 |
| Faecalibacterium prausnitzii | Faecalibacterium | 3.6431 |
| Prevotella copri | Prevotella | 3.3499 |
| Limosilactobacillus mucosae | Limosilactobacillus | 2.4837 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.9672 |
| Blautia producta | Blautia | 1.9443 |
| Limosilactobacillus equigenerosi | Limosilactobacillus | 1.5701 |
| Lactobacillus psittaci | Lactobacillus | 1.3779 |
| Blautia luti | Blautia | 1.2459 |
| Blautia faecis | Blautia | 1.1144 |
| Blautia hansenii | Blautia | 1.1003 |
| Limosilactobacillus gorillae | Limosilactobacillus | 1.0643 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 1.0438 |
| Agathobacter ruminis | Agathobacter | 1.0080 |
| Limosilactobacillus oris | Limosilactobacillus | 0.9882 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.9859 |
| Anaerostipes hadrus | Anaerostipes | 0.9311 |
| Blautia glucerasea | Blautia | 0.8487 |
| Dorea longicatena | Dorea | 0.7736 |
| Blautia obeum | Blautia | 0.7067 |
| Collinsella aerofaciens | Collinsella | 0.6436 |
| Lactobacillus delbrueckii | Lactobacillus | 0.6424 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.6231 |
| Bifidobacterium longum | Bifidobacterium | 0.6230 |
| Blautia wexlerae | Blautia | 0.6115 |
| Subdoligranulum variabile | Subdoligranulum | 0.5949 |
| Limosilactobacillus alvi | Limosilactobacillus | 0.5928 |
| Lactobacillus acetotolerans | Lactobacillus | 0.5087 |
| Prevotella jejuni | Prevotella | 0.4500 |
| Dorea formicigenerans | Dorea | 0.4314 |
| Phocaeicola dorei | Phocaeicola | 0.3600 |
| Streptococcus salivarius | Streptococcus | 0.3491 |
| Prevotella nigrescens | Prevotella | 0.3149 |
| Blautia schinkii | Blautia | 0.2291 |
| Phocaeicola vulgatus | Phocaeicola | 0.2014 |
| Prevotella ruminicola | Prevotella | 0.1985 |
| Blautia stercoris | Blautia | 0.1979 |
| Parabacteroides merdae | Parabacteroides | 0.1780 |
| Romboutsia timonensis | Romboutsia | 0.1643 |
| Romboutsia lituseburensis | Romboutsia | 0.1575 |
Saved public metadata
{
"run_accession": "SRR22464782",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919560",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "24532",
"base_count": "29281853",
"fastq_bytes": "24191903",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/082/SRR22464782/SRR22464782_1.fastq.gz",
"sample_title": "D23-Probiotic 0H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9050d67f6d392e9087fca430973f50db577cc551a53128863855c76ff2b92241",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1167.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5159,
"elapsed_seconds": 1.8151845839997804,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 21,
"fraction": 0.105,
"adapters_found": {
"1492R_rc": 16,
"27F": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}