SRR22464776 · Gut microbiome
D32-Synbiotic 0H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus fermentum | Limosilactobacillus | 63.6051 |
| Prevotella copri | Prevotella | 4.8546 |
| Faecalibacterium prausnitzii | Faecalibacterium | 3.9959 |
| Limosilactobacillus mucosae | Limosilactobacillus | 2.3947 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.0664 |
| Limosilactobacillus equigenerosi | Limosilactobacillus | 1.8271 |
| Blautia producta | Blautia | 1.7594 |
| Lactobacillus psittaci | Lactobacillus | 1.3723 |
| Bifidobacterium adolescentis | Bifidobacterium | 1.1590 |
| Blautia hansenii | Blautia | 1.1066 |
| Limosilactobacillus gorillae | Limosilactobacillus | 1.0573 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 1.0204 |
| Blautia luti | Blautia | 0.9237 |
| Blautia faecis | Blautia | 0.9028 |
| Anaerostipes hadrus | Anaerostipes | 0.8189 |
| Lactobacillus delbrueckii | Lactobacillus | 0.8000 |
| Gemmiger formicilis | Gemmiger | 0.7986 |
| Collinsella aerofaciens | Collinsella | 0.7704 |
| Limosilactobacillus oris | Limosilactobacillus | 0.7547 |
| Bifidobacterium longum | Bifidobacterium | 0.7357 |
| Agathobacter ruminis | Agathobacter | 0.6876 |
| Limosilactobacillus alvi | Limosilactobacillus | 0.6785 |
| Dorea longicatena | Dorea | 0.6663 |
| Blautia glucerasea | Blautia | 0.5858 |
| Blautia wexlerae | Blautia | 0.5786 |
| Blautia obeum | Blautia | 0.5564 |
| Prevotella jejuni | Prevotella | 0.4052 |
| Lactobacillus acetotolerans | Lactobacillus | 0.4038 |
| Streptococcus salivarius | Streptococcus | 0.3815 |
| Prevotella nigrescens | Prevotella | 0.3748 |
| Subdoligranulum variabile | Subdoligranulum | 0.2933 |
| Prevotella ruminicola | Prevotella | 0.2920 |
| Dorea formicigenerans | Dorea | 0.2915 |
| Blautia stercoris | Blautia | 0.2804 |
| Prevotella brevis | Prevotella | 0.2637 |
| Parabacteroides distasonis | Parabacteroides | 0.2082 |
| Prevotella veroralis | Prevotella | 0.1878 |
| Blautia schinkii | Blautia | 0.1416 |
Saved public metadata
{
"run_accession": "SRR22464776",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919565",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "26183",
"base_count": "30442850",
"fastq_bytes": "25142034",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/076/SRR22464776/SRR22464776_1.fastq.gz",
"sample_title": "D32-Synbiotic 0H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f6cdaa813658dd3aa42899a523f1648070dc4fbd301f58fa2743b7d2693d5b5f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1159.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5389,
"elapsed_seconds": 2.117104932999979,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 13,
"fraction": 0.065,
"adapters_found": {
"1492R_rc": 13
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}