SRR22464762 · Gut microbiome
D13-Probiotic 24H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus fermentum | Limosilactobacillus | 44.7841 |
| Allocoprococcus comes | Allocoprococcus | 11.4368 |
| Anaerostipes hadrus | Anaerostipes | 8.2837 |
| Salmonella enterica | Salmonella | 2.5415 |
| Dorea longicatena | Dorea | 2.4980 |
| Blautia producta | Blautia | 2.4441 |
| Dorea formicigenerans | Dorea | 2.0418 |
| Limosilactobacillus mucosae | Limosilactobacillus | 1.8050 |
| Blautia luti | Blautia | 1.7507 |
| Blautia hansenii | Blautia | 1.7096 |
| Blautia glucerasea | Blautia | 1.3932 |
| Blautia faecis | Blautia | 1.3922 |
| Limosilactobacillus equigenerosi | Limosilactobacillus | 1.3767 |
| Alistipes shahii | Alistipes | 1.3650 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.2671 |
| Bacteroides uniformis | Bacteroides | 1.2205 |
| Blautia obeum | Blautia | 1.1108 |
| Lactobacillus psittaci | Lactobacillus | 0.8140 |
| Limosilactobacillus gorillae | Limosilactobacillus | 0.7511 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.7401 |
| Blautia wexlerae | Blautia | 0.6915 |
| Gemmiger formicilis | Gemmiger | 0.6341 |
| Anaerotignum faecicola | Anaerotignum | 0.5999 |
| Limosilactobacillus oris | Limosilactobacillus | 0.5673 |
| Bacteroides ovatus | Bacteroides | 0.5634 |
| Alistipes putredinis | Alistipes | 0.5269 |
| Bifidobacterium longum | Bifidobacterium | 0.5082 |
| Lactobacillus delbrueckii | Lactobacillus | 0.4893 |
| Alistipes finegoldii | Alistipes | 0.4687 |
| Anaerostipes butyraticus | Anaerostipes | 0.4186 |
| Collinsella aerofaciens | Collinsella | 0.4186 |
| Limosilactobacillus alvi | Limosilactobacillus | 0.3818 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.3510 |
| Alistipes onderdonkii | Alistipes | 0.3442 |
| Blautia schinkii | Blautia | 0.3306 |
| Pseudocoprococcus catus | Pseudocoprococcus | 0.3262 |
| Lactobacillus acetotolerans | Lactobacillus | 0.2867 |
| Bacteroides fragilis | Bacteroides | 0.2691 |
| Alistipes inops | Alistipes | 0.2554 |
| Anaerotignum neopropionicum | Anaerotignum | 0.2541 |
| Phocaeicola vulgatus | Phocaeicola | 0.2323 |
| Blautia stercoris | Blautia | 0.1917 |
| Anaerostipes caccae | Anaerostipes | 0.1644 |
Saved public metadata
{
"run_accession": "SRR22464762",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919578",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "28155",
"base_count": "34463147",
"fastq_bytes": "29194672",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/062/SRR22464762/SRR22464762_1.fastq.gz",
"sample_title": "D13-Probiotic 24H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "fafc8d458f18c20411ac9d707f088e336cd72237af5ae0b5b4a3b55ac4904219",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1170.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 6491,
"elapsed_seconds": 2.0478032939999764,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 20,
"fraction": 0.1,
"adapters_found": {
"1492R_rc": 18,
"27F": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}