SRR22464760 · Gut microbiome
D21-Synbiotic 24H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus fermentum | Limosilactobacillus | 73.3278 |
| Limosilactobacillus mucosae | Limosilactobacillus | 2.6770 |
| Limosilactobacillus reuteri | Limosilactobacillus | 2.2000 |
| Limosilactobacillus equigenerosi | Limosilactobacillus | 2.0520 |
| Faecalibacterium prausnitzii | Faecalibacterium | 1.5304 |
| Lactobacillus psittaci | Lactobacillus | 1.3886 |
| Blautia producta | Blautia | 1.3263 |
| Gemmiger formicilis | Gemmiger | 1.0804 |
| Limosilactobacillus gorillae | Limosilactobacillus | 1.0728 |
| Lactobacillus delbrueckii | Lactobacillus | 0.9173 |
| Blautia luti | Blautia | 0.9081 |
| Limosilactobacillus oris | Limosilactobacillus | 0.8836 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.8188 |
| Blautia faecis | Blautia | 0.8175 |
| Limosilactobacillus alvi | Limosilactobacillus | 0.8067 |
| Blautia hansenii | Blautia | 0.7742 |
| Anaerostipes hadrus | Anaerostipes | 0.7388 |
| Blautia wexlerae | Blautia | 0.6606 |
| Lactobacillus acetotolerans | Lactobacillus | 0.6296 |
| Blautia obeum | Blautia | 0.5267 |
| Bifidobacterium longum | Bifidobacterium | 0.5223 |
| Bacteroides uniformis | Bacteroides | 0.4707 |
| Phocaeicola vulgatus | Phocaeicola | 0.4449 |
| Collinsella aerofaciens | Collinsella | 0.3868 |
| Bacteroides ovatus | Bacteroides | 0.3675 |
| Blautia glucerasea | Blautia | 0.3629 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.3610 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.3223 |
| Allocoprococcus comes | Allocoprococcus | 0.2901 |
| Dorea longicatena | Dorea | 0.2705 |
| Blautia stercoris | Blautia | 0.2593 |
| Subdoligranulum variabile | Subdoligranulum | 0.2159 |
| Agathobacter ruminis | Agathobacter | 0.1676 |
| Blautia schinkii | Blautia | 0.1439 |
| Alistipes putredinis | Alistipes | 0.1417 |
| Dorea formicigenerans | Dorea | 0.1354 |
Saved public metadata
{
"run_accession": "SRR22464760",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919580",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "25961",
"base_count": "30502070",
"fastq_bytes": "24571372",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/060/SRR22464760/SRR22464760_1.fastq.gz",
"sample_title": "D21-Synbiotic 24H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "44e10d6a5fca3f105a84d1d07b27c3781f76f01dce6444f56be3d25e6827d95c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1166.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4344,
"elapsed_seconds": 2.2295713150000154,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 34,
"fraction": 0.17,
"adapters_found": {
"1492R_rc": 29,
"27F": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}