SRR22464757 · Gut microbiome
D22-Synbiotic 24H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus fermentum | Limosilactobacillus | 38.5314 |
| Allocoprococcus comes | Allocoprococcus | 11.1234 |
| Blautia luti | Blautia | 6.5475 |
| Blautia producta | Blautia | 5.9733 |
| Bacteroides uniformis | Bacteroides | 5.0158 |
| Blautia obeum | Blautia | 3.4263 |
| Blautia hansenii | Blautia | 3.2598 |
| Blautia faecis | Blautia | 3.0495 |
| Dorea longicatena | Dorea | 1.9956 |
| Blautia glucerasea | Blautia | 1.9473 |
| Limosilactobacillus mucosae | Limosilactobacillus | 1.6530 |
| Parabacteroides distasonis | Parabacteroides | 1.5594 |
| Blautia schinkii | Blautia | 1.4573 |
| Bacteroides ovatus | Bacteroides | 1.3526 |
| Dorea formicigenerans | Dorea | 1.3220 |
| Blautia wexlerae | Blautia | 1.3080 |
| Limosilactobacillus equigenerosi | Limosilactobacillus | 1.2351 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.1309 |
| Bacteroides cellulosilyticus | Bacteroides | 0.7794 |
| Anaerostipes hadrus | Anaerostipes | 0.7688 |
| Lactobacillus psittaci | Lactobacillus | 0.7244 |
| Blautia stercoris | Blautia | 0.6642 |
| Bacteroides fragilis | Bacteroides | 0.5932 |
| Limosilactobacillus oris | Limosilactobacillus | 0.5392 |
| Lactobacillus delbrueckii | Lactobacillus | 0.5025 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.4834 |
| Limosilactobacillus gorillae | Limosilactobacillus | 0.4678 |
| Limosilactobacillus alvi | Limosilactobacillus | 0.3724 |
| Bacteroides xylanisolvens | Bacteroides | 0.3688 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.3331 |
| Bacteroides zoogleoformans | Bacteroides | 0.2997 |
| Bacteroides stercoris | Bacteroides | 0.2916 |
| Bacteroides timonensis | Bacteroides | 0.2652 |
| Parabacteroides gordonii | Parabacteroides | 0.2582 |
| Parabacteroides goldsteinii | Parabacteroides | 0.2082 |
| Lactobacillus acetotolerans | Lactobacillus | 0.1917 |
Saved public metadata
{
"run_accession": "SRR22464757",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919583",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "27066",
"base_count": "30987692",
"fastq_bytes": "26048895",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/057/SRR22464757/SRR22464757_1.fastq.gz",
"sample_title": "D22-Synbiotic 24H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f5dc629ea65cf957676549b8010051bd13fd86d01094a7a848a21162b2a62ec8",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1136.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 7920,
"elapsed_seconds": 1.4848918149998553,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 19,
"fraction": 0.095,
"adapters_found": {
"1492R_rc": 19
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}