SRR22464756 · Gut microbiome

D22-Probiotic 24H

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Limosilactobacillus fermentum	Limosilactobacillus	62.8019
Faecalibacterium prausnitzii	Faecalibacterium	4.3006
Limosilactobacillus mucosae	Limosilactobacillus	2.6757
Limosilactobacillus reuteri	Limosilactobacillus	1.9803
Blautia producta	Blautia	1.9210
Gemmiger formicilis	Gemmiger	1.8689
Blautia faecis	Blautia	1.3625
Limosilactobacillus equigenerosi	Limosilactobacillus	1.3307
Lactobacillus psittaci	Lactobacillus	1.3019
Anaerostipes hadrus	Anaerostipes	1.2785
Agathobacter ruminis	Agathobacter	1.1816
Limosilactobacillus gorillae	Limosilactobacillus	1.1413
Blautia luti	Blautia	1.0590
Blautia wexlerae	Blautia	1.0243
Blautia hansenii	Blautia	1.0057
Blautia glucerasea	Blautia	0.9134
Bifidobacterium adolescentis	Bifidobacterium	0.8957
Phocaeicola vulgatus	Phocaeicola	0.8608
Anaerobutyricum hallii	Anaerobutyricum	0.8198
Limosilactobacillus oris	Limosilactobacillus	0.7938
Bacteroides uniformis	Bacteroides	0.7256
Bifidobacterium longum	Bifidobacterium	0.7134
Blautia obeum	Blautia	0.6727
Fusicatenibacter saccharivorans	Fusicatenibacter	0.6114
Lactobacillus delbrueckii	Lactobacillus	0.5779
Lactobacillus acetotolerans	Lactobacillus	0.5578
Limosilactobacillus alvi	Limosilactobacillus	0.5003
Bacteroides thetaiotaomicron	Bacteroides	0.4735
Mediterraneibacter glycyrrhizinilyticus	Mediterraneibacter	0.4418
Bacteroides stercoris	Bacteroides	0.4168
Coprococcus eutactus	Coprococcus	0.4099
Bacteroides ovatus	Bacteroides	0.4080
Subdoligranulum variabile	Subdoligranulum	0.4063
Dorea longicatena	Dorea	0.3608
Allocoprococcus comes	Allocoprococcus	0.3225
Bifidobacterium catenulatum	Bifidobacterium	0.3008
Bacteroides cellulosilyticus	Bacteroides	0.2946
Blautia stercoris	Blautia	0.2664
Bacteroides fragilis	Bacteroides	0.2318
Dorea formicigenerans	Dorea	0.2293
Bacteroides zoogleoformans	Bacteroides	0.2226
Anaerostipes butyraticus	Anaerostipes	0.1865
Pseudocoprococcus catus	Pseudocoprococcus	0.1519

Saved public metadata

{
  "run_accession": "SRR22464756",
  "study_accession": "PRJNA906335",
  "sample_accession": "SAMN31919584",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "MinION",
  "library_strategy": "AMPLICON",
  "library_source": "GENOMIC",
  "library_selection": "PCR",
  "read_count": "23599",
  "base_count": "29649439",
  "fastq_bytes": "24773843",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/056/SRR22464756/SRR22464756_1.fastq.gz",
  "sample_title": "D22-Probiotic 24H",
  "scientific_name": "gut metagenome"
}

Public files

SRR22464756_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "1fa502127801683958d898790d56afc848d5dee509813114daf38c02fb509f46",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1188.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 5502,
    "elapsed_seconds": 2.181440741000017,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 19,
      "fraction": 0.095,
      "adapters_found": {
        "1492R_rc": 19
      },
      "should_trim": true
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}