SRR22464753 · Gut microbiome
D23-Probiotic 24H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Allocoprococcus comes | Allocoprococcus | 26.1799 |
| Anaerostipes hadrus | Anaerostipes | 18.1810 |
| Salmonella enterica | Salmonella | 9.3033 |
| Blautia producta | Blautia | 4.2099 |
| Dorea longicatena | Dorea | 4.1995 |
| Blautia luti | Blautia | 3.3833 |
| Dorea formicigenerans | Dorea | 3.0400 |
| Blautia hansenii | Blautia | 2.7663 |
| Blautia faecis | Blautia | 2.5988 |
| Blautia obeum | Blautia | 2.5394 |
| Alistipes shahii | Alistipes | 2.3401 |
| Blautia glucerasea | Blautia | 2.3334 |
| Bacteroides uniformis | Bacteroides | 2.0152 |
| Bifidobacterium adolescentis | Bifidobacterium | 1.8271 |
| Blautia wexlerae | Blautia | 1.6543 |
| Collinsella aerofaciens | Collinsella | 1.3159 |
| Anaerotignum faecicola | Anaerotignum | 1.0070 |
| Anaerostipes butyraticus | Anaerostipes | 0.9974 |
| Alistipes finegoldii | Alistipes | 0.9719 |
| Blautia schinkii | Blautia | 0.9657 |
| Bifidobacterium longum | Bifidobacterium | 0.9169 |
| Alistipes putredinis | Alistipes | 0.8494 |
| Gemmiger formicilis | Gemmiger | 0.7294 |
| Bacteroides ovatus | Bacteroides | 0.7207 |
| Anaerostipes caccae | Anaerostipes | 0.5936 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.5347 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4917 |
| Blautia stercoris | Blautia | 0.4303 |
| Alistipes onderdonkii | Alistipes | 0.4289 |
| Alistipes inops | Alistipes | 0.4080 |
| Anaerotignum neopropionicum | Anaerotignum | 0.3894 |
| Limosilactobacillus fermentum | Limosilactobacillus | 0.3672 |
| Bacteroides fragilis | Bacteroides | 0.3260 |
| Eshraghiella crossota | Eshraghiella | 0.2652 |
| Phocaeicola vulgatus | Phocaeicola | 0.2550 |
| Subdoligranulum variabile | Subdoligranulum | 0.2474 |
| Bacteroides zoogleoformans | Bacteroides | 0.2165 |
Saved public metadata
{
"run_accession": "SRR22464753",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919586",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "25277",
"base_count": "29079139",
"fastq_bytes": "24729113",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/053/SRR22464753/SRR22464753_1.fastq.gz",
"sample_title": "D23-Probiotic 24H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "66173558a290b617854b51e4e7431e1310e644da48de71988347bb63280279d9",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1142.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 10009,
"elapsed_seconds": 1.8199223430000018,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 27,
"fraction": 0.135,
"adapters_found": {
"27F": 4,
"1492R_rc": 22,
"BC_FLANK": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}