SRR22464745 · Gut microbiome
D33-Synbiotic 24H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus fermentum | Limosilactobacillus | 16.4508 |
| Bacteroides uniformis | Bacteroides | 12.0522 |
| Dorea longicatena | Dorea | 11.1344 |
| Dorea formicigenerans | Dorea | 7.7804 |
| Blautia wexlerae | Blautia | 5.9274 |
| Blautia luti | Blautia | 4.8170 |
| Blautia producta | Blautia | 3.8572 |
| Bacteroides ovatus | Bacteroides | 3.5413 |
| Blautia faecis | Blautia | 3.3840 |
| Blautia glucerasea | Blautia | 3.1965 |
| Blautia hansenii | Blautia | 3.1901 |
| Phocaeicola plebeius | Phocaeicola | 2.4082 |
| Blautia obeum | Blautia | 2.1677 |
| Parabacteroides distasonis | Parabacteroides | 1.9032 |
| Bacteroides cellulosilyticus | Bacteroides | 1.8715 |
| Allocoprococcus comes | Allocoprococcus | 1.7077 |
| Roseburia inulinivorans | Roseburia | 1.3815 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.3105 |
| Roseburia hominis | Roseburia | 1.0423 |
| Alistipes putredinis | Alistipes | 0.9944 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.9508 |
| Alistipes finegoldii | Alistipes | 0.9080 |
| Alistipes shahii | Alistipes | 0.9079 |
| Bacteroides zoogleoformans | Bacteroides | 0.8904 |
| Bacteroides fragilis | Bacteroides | 0.8269 |
| Anaerotignum faecicola | Anaerotignum | 0.8214 |
| Bacteroides timonensis | Bacteroides | 0.7982 |
| Roseburia intestinalis | Roseburia | 0.7972 |
| Parabacteroides merdae | Parabacteroides | 0.7773 |
| Bacteroides stercoris | Bacteroides | 0.6630 |
| Blautia schinkii | Blautia | 0.5894 |
| Dialister histaminiformans | Dialister | 0.4972 |
| Collinsella aerofaciens | Collinsella | 0.4540 |
Saved public metadata
{
"run_accession": "SRR22464745",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919594",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "6348",
"base_count": "7664917",
"fastq_bytes": "6643397",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/045/SRR22464745/SRR22464745_1.fastq.gz",
"sample_title": "D33-Synbiotic 24H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "61a9c39ec5f5120b3fbe3cda4ce364b0e5aed04921c12c4e590e90aeabfbece0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1163.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 6348,
"reads_skipped": 1513,
"elapsed_seconds": 0.8557737610000018,
"reads_submitted": 6348,
"reads_after_filter": 6348,
"adapter_scan": {
"sampled": 200,
"matched": 22,
"fraction": 0.11,
"adapters_found": {
"1492R_rc": 21,
"27F": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}