SRR22464741 · Gut microbiome
D13-Synbiotic 0H
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus fermentum | Limosilactobacillus | 61.8186 |
| Blautia wexlerae | Blautia | 4.4039 |
| Blautia luti | Blautia | 2.5001 |
| Blautia producta | Blautia | 2.4371 |
| Limosilactobacillus mucosae | Limosilactobacillus | 2.1516 |
| Blautia faecis | Blautia | 2.0230 |
| Blautia hansenii | Blautia | 1.9729 |
| Limosilactobacillus equigenerosi | Limosilactobacillus | 1.6274 |
| Megamonas funiformis | Megamonas | 1.5773 |
| Limosilactobacillus reuteri | Limosilactobacillus | 1.5436 |
| Blautia obeum | Blautia | 1.4582 |
| Collinsella aerofaciens | Collinsella | 1.2833 |
| Blautia glucerasea | Blautia | 1.2320 |
| Lactobacillus psittaci | Lactobacillus | 1.0281 |
| Bacteroides stercoris | Bacteroides | 1.0047 |
| Bacteroides uniformis | Bacteroides | 0.9878 |
| Limosilactobacillus gorillae | Limosilactobacillus | 0.9298 |
| Lactobacillus delbrueckii | Lactobacillus | 0.7224 |
| Bacteroides ovatus | Bacteroides | 0.7206 |
| Dorea longicatena | Dorea | 0.7153 |
| Limosilactobacillus oris | Limosilactobacillus | 0.6477 |
| Bifidobacterium adolescentis | Bifidobacterium | 0.6236 |
| Phocaeicola vulgatus | Phocaeicola | 0.6194 |
| Limosilactobacillus alvi | Limosilactobacillus | 0.5691 |
| Megamonas hypermegale | Megamonas | 0.5562 |
| Phocaeicola plebeius | Phocaeicola | 0.4965 |
| Megamonas rupellensis | Megamonas | 0.4928 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.4589 |
| Dorea formicigenerans | Dorea | 0.4584 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.3981 |
| Lactobacillus acetotolerans | Lactobacillus | 0.3858 |
| Anaerostipes hadrus | Anaerostipes | 0.3548 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.3482 |
| Bacteroides cellulosilyticus | Bacteroides | 0.3203 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.3095 |
| Bifidobacterium longum | Bifidobacterium | 0.2663 |
| Blautia schinkii | Blautia | 0.2222 |
| Paraburkholderia fungorum | Paraburkholderia | 0.1870 |
| Bacteroides zoogleoformans | Bacteroides | 0.1472 |
Saved public metadata
{
"run_accession": "SRR22464741",
"study_accession": "PRJNA906335",
"sample_accession": "SAMN31919551",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "19950",
"base_count": "23243095",
"fastq_bytes": "19102988",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR224/041/SRR22464741/SRR22464741_1.fastq.gz",
"sample_title": "D13-Synbiotic 0H",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "84dc8673ff663d1eb59c9d9d2947f4f349c877004fb9a3fdcdee43a3af9f4c1b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1162.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 19950,
"reads_skipped": 4304,
"elapsed_seconds": 1.8090489900000648,
"reads_submitted": 19950,
"reads_after_filter": 19950,
"adapter_scan": {
"sampled": 200,
"matched": 17,
"fraction": 0.085,
"adapters_found": {
"1492R_rc": 15,
"27F": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}