SRR19790737 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Pseudomonas aeruginosa | Pseudomonas | 14.5925 |
| Prevotella ruminicola | Prevotella | 10.4969 |
| Sneathia amnii | Sneathia | 6.1269 |
| Sneathia sanguinegens | Sneathia | 5.5365 |
| Fusobacterium nucleatum | Fusobacterium | 5.0187 |
| Pseudomonas fragi | Pseudomonas | 4.7699 |
| Pseudomonas chlororaphis | Pseudomonas | 4.4812 |
| Pseudomonas monteilii | Pseudomonas | 4.3583 |
| Prevotella nanceiensis | Prevotella | 4.1327 |
| Fusobacterium perfoetens | Fusobacterium | 3.9558 |
| Pseudomonas moorei | Pseudomonas | 3.6367 |
| Pseudomonas yamanorum | Pseudomonas | 3.4969 |
| Neisseria flavescens | Neisseria | 3.1199 |
| Streptococcus mitis | Streptococcus | 2.9156 |
| Streptococcus downei | Streptococcus | 2.4070 |
| Streptococcus salivarius | Streptococcus | 2.1175 |
| Pseudomonas protegens | Pseudomonas | 1.5956 |
| Dialister micraerophilus | Dialister | 1.5397 |
| Pseudomonas veronii | Pseudomonas | 1.4999 |
| Prevotella intermedia | Prevotella | 1.4062 |
| Prevotella bivia | Prevotella | 1.3569 |
| Pseudomonas azotoformans | Pseudomonas | 1.3505 |
| Fusobacterium russii | Fusobacterium | 1.1228 |
| Streptococcus pyogenes | Streptococcus | 1.1109 |
| Neisseria gonorrhoeae | Neisseria | 1.1094 |
| Prevotella buccalis | Prevotella | 1.0588 |
| Prevotella brevis | Prevotella | 1.0076 |
| Pseudomonas taetrolens | Pseudomonas | 0.9695 |
| Dialister hominis | Dialister | 0.9331 |
| Prevotella nigrescens | Prevotella | 0.8782 |
| Pseudomonas syringae | Pseudomonas | 0.6448 |
| Pseudomonas fluorescens | Pseudomonas | 0.6425 |
| Fusobacterium periodonticum | Fusobacterium | 0.6105 |
Saved public metadata
{
"run_accession": "SRR19790737",
"study_accession": "PRJNA851818",
"sample_accession": "SAMN29257228",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "6969",
"base_count": "10161366",
"fastq_bytes": "10238139",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR197/037/SRR19790737/SRR19790737_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "1d1bdfc4fc44e68c1b55876b62988613a9019116a9b5d5ccc330c19efd98a9c0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1462,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 6969,
"reads_skipped": 2567,
"elapsed_seconds": 0.8761413990000619,
"reads_submitted": 6969,
"reads_after_filter": 6969,
"adapter_scan": {
"sampled": 200,
"matched": 24,
"fraction": 0.12,
"adapters_found": {
"BC_FLANK": 17,
"27F": 7
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}